View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_28 (Length: 241)
Name: NF8253_high_28
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32479805 - 32479577
Alignment:
| Q |
1 |
atagttaaaatgtataatatactcgtgtcacatattttgatcagccgcatttgattctaatgaaaaa-catgagaggaacccatcacctacattcaaaat |
99 |
Q |
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| T |
32479805 |
atagttaaaatgtataatatactcgtgtcacatattttgatcagccgcatttgattctaatgaaaaaacatgagaggaacccatcacctacattcaaaat |
32479706 |
T |
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| Q |
100 |
tagatcctttgcgagcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgcagtaaaagtgtattcaggatattatcagtg |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
32479705 |
tagatccttcgcgagcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgcagtaaaagtgcattcaggatattataagtg |
32479606 |
T |
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| Q |
200 |
gtgaaactgaactctgaaggggatttttg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32479605 |
ctgaaactgaactctgaaggggatttttg |
32479577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 17206771 - 17206714
Alignment:
| Q |
113 |
agcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgca |
170 |
Q |
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|||||||| || |||||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
17206771 |
agcaaataattcggcatttctccatccattacaaatctcaaagttggaggcacctgca |
17206714 |
T |
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