View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_32 (Length: 212)
Name: NF8253_high_32
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 1634196 - 1634011
Alignment:
| Q |
12 |
acacacgtacacggaaagaaagattgaacatgaaatagtaacactaaatttaagattgacttacgtatttttccattctgaaatttcaacttatacatga |
111 |
Q |
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| T |
1634196 |
acacacatacatggaaagaaagattgaacatgaattagtaacactaaatttaagattgacttacgtatttttccattctgaaatttcaacttatacatga |
1634097 |
T |
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| Q |
112 |
ttataaataaaattgaaaccaaaatattctcaagcaactacaactactaaactaaac-ccaatctatttgtcaacaagtcatagct |
196 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1634096 |
ttataaataaaattgaaaacaaaatattctcaagcaactacaactactaaactaaactccaatctatttgtcaacaagtcatagct |
1634011 |
T |
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