View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8253_high_4 (Length: 444)

Name: NF8253_high_4
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8253_high_4
NF8253_high_4
[»] chr4 (13 HSPs)
chr4 (1-429)||(41362099-41362510)
chr4 (142-341)||(5955291-5955491)
chr4 (54-316)||(30843132-30843395)
chr4 (54-316)||(43702756-43703018)
chr4 (81-379)||(26939036-26939334)
chr4 (54-316)||(47476465-47476728)
chr4 (142-298)||(18542496-18542652)
chr4 (15-317)||(3425451-3425754)
chr4 (18-58)||(26938990-26939030)
chr4 (142-230)||(53668135-53668222)
chr4 (45-113)||(903108-903176)
chr4 (178-230)||(35421365-35421417)
chr4 (61-121)||(5955493-5955553)
[»] chr3 (14 HSPs)
chr3 (18-381)||(8601621-8601984)
chr3 (23-296)||(38341860-38342133)
chr3 (87-269)||(46808482-46808663)
chr3 (18-377)||(42724540-42724899)
chr3 (54-316)||(39349625-39349888)
chr3 (263-381)||(38342127-38342245)
chr3 (54-315)||(43726064-43726326)
chr3 (177-264)||(3526359-3526446)
chr3 (290-390)||(46808657-46808757)
chr3 (81-298)||(51898600-51898821)
chr3 (24-77)||(3526450-3526503)
chr3 (18-59)||(51898554-51898595)
chr3 (13-57)||(46808424-46808468)
chr3 (54-117)||(26981528-26981591)
[»] chr1 (11 HSPs)
chr1 (12-371)||(50547566-50547926)
chr1 (13-381)||(43626478-43626831)
chr1 (13-229)||(26114774-26114991)
chr1 (81-381)||(35067332-35067634)
chr1 (54-316)||(32295767-32296027)
chr1 (18-376)||(10887702-10888061)
chr1 (248-381)||(26114656-26114789)
chr1 (81-316)||(28791931-28792167)
chr1 (54-227)||(42093227-42093401)
chr1 (13-59)||(35067281-35067327)
chr1 (244-298)||(42093190-42093244)
[»] chr7 (11 HSPs)
chr7 (13-381)||(46269874-46270242)
chr7 (18-381)||(47249304-47249667)
chr7 (142-381)||(14966293-14966532)
chr7 (142-381)||(15395765-15396004)
chr7 (81-381)||(31187107-31187409)
chr7 (83-378)||(39975092-39975388)
chr7 (18-115)||(14966202-14966299)
chr7 (18-115)||(15395674-15395771)
chr7 (13-59)||(31187414-31187460)
chr7 (13-59)||(39975039-39975085)
chr7 (178-230)||(5640624-5640676)
[»] chr2 (5 HSPs)
chr2 (13-381)||(3406590-3406958)
chr2 (142-230)||(9676528-9676615)
chr2 (142-231)||(34319099-34319187)
chr2 (178-230)||(31074902-31074954)
chr2 (178-227)||(35740158-35740207)
[»] chr8 (12 HSPs)
chr8 (18-381)||(34660377-34660740)
chr8 (12-374)||(5344880-5345242)
chr8 (125-374)||(43097157-43097407)
chr8 (150-390)||(44997059-44997299)
chr8 (81-316)||(40521661-40521897)
chr8 (23-298)||(42279352-42279624)
chr8 (81-316)||(36833471-36833707)
chr8 (17-118)||(44997297-44997398)
chr8 (30-113)||(14088775-14088858)
chr8 (18-57)||(36833425-36833464)
chr8 (178-230)||(31382629-31382681)
chr8 (149-230)||(26221115-26221194)
[»] chr5 (9 HSPs)
chr5 (13-381)||(29359581-29359945)
chr5 (18-381)||(35335824-35336194)
chr5 (54-316)||(6660409-6660672)
chr5 (81-390)||(10016600-10016910)
chr5 (68-381)||(36340451-36340764)
chr5 (82-316)||(38366393-38366628)
chr5 (23-316)||(30619096-30619386)
chr5 (18-59)||(10016554-10016595)
chr5 (42-115)||(17220164-17220237)
[»] chr6 (5 HSPs)
chr6 (81-222)||(6941125-6941267)
chr6 (244-390)||(6941255-6941401)
chr6 (178-230)||(10901305-10901357)
chr6 (142-229)||(13286570-13286656)
chr6 (15-59)||(6941077-6941120)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 41362099 - 41362510
Alignment:
Q  1 tttgacagctctagcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |                 |||||||||||| || ||||    
T  41362099 tttgacagctctagcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacagatg-----------------gcttctgcctctatattgat 41362181  T
Q  101 gcattccggattataaattccagacagatgtatgagatttcgattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtga 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41362182 gcattccggattataaattccagacagatgtatgagattccgattatataatccggaaccatcattcaccacccccttttgttgactttcaactaggtga 41362281  T
Q  201 tttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41362282 tttacacctttcggattttataatccggaaattctctaaattgttcagattgtataatccggatccatctattcataacttacatcttcatccatcagca 41362381  T
Q  301 tgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggtgttctggggnnnnnnntag 400  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||        |||    
T  41362382 tgatgaagtggcaaaaatcgcaaaacattccggattgtatattctggaatggtttcagattatataatccggactaggaatgttctgggaaaaaaaatag 41362481  T
Q  401 ggcgaggaaaggcatggggtgggaaaagt 429  Q
    |||||||||||||||||||||||||||||    
T  41362482 ggcgaggaaaggcatggggtgggaaaagt 41362510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 142 - 341
Target Start/End: Complemental strand, 5955491 - 5955291
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaat 241  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  5955491 gattatataatccggaaccatcattcaccaccccgttttattgactttcaacagggtgatttacacctttcggattttataatccgaaaattctctaaat 5955392  T
Q  242 tgttcggattgtataatccggatccatctattcataac-ttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtat 340  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||   |||||||||||||||| |||    
T  5955391 tgttcggattgtataatccggatccatctattcataactttacatcttcatccatcaagatgatgaagtgccaaaaaccacaaaacattccggattatat 5955292  T
Q  341 a 341  Q
    |    
T  5955291 a 5955291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 54 - 316
Target Start/End: Complemental strand, 30843395 - 30843132
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||||||||||||| |||||||   ||||||||||||||||||||||||||||| ||||| | ||| ||||  | ||| |  || || ||||||||||    
T  30843395 aaaacacaggctcagctaaaacagatggcttctgcctctgtactgatgcattccggtttatataatccggacatgtttatcactttccggattatataat 30843296  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    |||||||| || ||||||||||| ||||||||||||||||   ||||||||||||  |||||||| ||||||||||||||  | |||| |||| |||||     
T  30843295 ccggaaccgtcgttcaccacccccttttgttgactttcaatagggtgatttacactattcggattatataatccggaaatgatataaaatgtttggatta 30843196  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||||  ||||||||||||||||    
T  30843195 tataatccggattcatctattcatcactgacatcttcatccatcagggtgatgaagtgccaaaa 30843132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 54 - 316
Target Start/End: Complemental strand, 43703018 - 43702756
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcgattatataatc 153  Q
    |||||| ||||||||| |||||||    ||||||||||| |||||||||| |  |||||||| | ||| ||||||| ||| | ||   ||||||||||||    
T  43703018 aaaacataggctcagccaaaacagatgacttctgcctctatactgatgcagtttggattatataatccggacagatttataacatccggattatataatc 43702919  T
Q  154 cggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgt 253  Q
    |||||||||| ||||||||||  |||||||||||||||||  |||||||||||| |||| |||| |||||| || ||||  | ||||||||||||||| |    
T  43702918 cggaaccatcgttcaccacccacttttgttgactttcaacggggtgatttacacttttcagattatataatacgaaaatcatataaattgttcggattat 43702819  T
Q  254 ataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||  |||| |||||||||||    
T  43702818 ataatccggattcatctattcattactgacatcttcatccatcagggtgattaagtgccaaaa 43702756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 81 - 379
Target Start/End: Original strand, 26939036 - 26939334
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||||||||||||||||||| || |||||||| | ||| ||||| | ||  |  ||||| |||||||| ||||||| |||| |||||  |||| |||    
T  26939036 gcttctgcctctgtactgatgcagtctggattatataatccggacaggtttagcacttttcgaattatatagtccggaatcatcgttcac--cccctttt 26939133  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    ||||||||||||||  |||||||||||| ||||||||| ||||||||||||  | ||||| || |||||||| ||||||||||| | || ||||||||||    
T  26939134 tgttgactttcaacggggtgatttacacgtttcggattatataatccggaagctatctaactttttcggattatataatccggaacaatatattcataac 26939233  T
Q  280 ttacatcttcatccatcagcat-gatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactagg 378  Q
    | ||||| |||| ||||||  | |||||||||||||||    | ||  | |||||| |  |||||  ||||||| |||||||||||||||||||||||||    
T  26939234 tgacatcatcattcatcagggtggatgaagtgccaaaatacacgaataaatccggaattaatatttcggaatgggttcggattatataatccggactagg 26939333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 316
Target Start/End: Original strand, 47476465 - 47476728
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| || |||||| |||||||   ||||||| |||||||||||||||||| |||||||| | ||| ||||| | ||| |  || || ||||||||||    
T  47476465 aaaacagagtctcagctaaaacagatggcttctgtctctgtactgatgcattctggattatataatccggacaggtttatcactttccggattatataat 47476564  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    |||||||| || ||||||||||  |||||||||||||||||   |||||||||||  ||| |||| ||||||| ||||||  | |||| ||||||||||     
T  47476565 ccggaaccgtcgttcaccacccacttttgttgactttcaacggagtgatttacactattcagattatataatctggaaatgatataaaatgttcggatta 47476664  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||| ||| ||||||||||| | | |||||||||||| | ||  |||||||||| |||||    
T  47476665 tataatccagattcatctattcatcagtgacatcttcatcctttagggtgatgaagtgtcaaaa 47476728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 298
Target Start/End: Complemental strand, 18542652 - 18542496
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaat 241  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||||  |||||||||||| |||| |||| ||||||||| ||  | |||||||    
T  18542652 gattatataatccgaaaccatcgttcaccacccccttttgttgactttcaacggggtgatttacacgtttcagattatataatccgaaagctatctaaat 18542553  T
Q  242 tgttcggattgtataatccggatccatctattcataacttacatcttcatccatcag 298  Q
    | || ||||| ||||||||| ||| |||||||||||||| ||| | |||||||||||    
T  18542552 tttttggattatataatccgaatctatctattcataactgacaccatcatccatcag 18542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 3425754 - 3425451
Alignment:
Q  15 cgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattat 114  Q
    |||||| |||||| ||||| ||||||||| ||||||||||||||| ||| ||| | |||||||   |||||||| | ||| |||||||| | ||||||||    
T  3425754 cgacatagtatgtatgtttagaagcaagctaaatgcgccaaaacagaggttcaaccaaaacagatggcttctgcatttgtgctgatgcagttcggattat 3425655  T
Q  115 aaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcg 213  Q
    | | ||| ||||| | ||  |  || | |||||| |||||| ||| || ||||  ||| |||| |||||| | |||||||  |||||||||||| ||| |    
T  3425654 ataatccggacagttttaacactttccggattatgtaatccagaaacaacattttccatccca-tttgttaattttcaacggggtgatttacacgttttg 3425556  T
Q  214 gattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatca-gcatgatgaagtgcc 312  Q
    |||| |||| |||  || || || | |   ||||||||  |||||||||||||||||||||||||||  |||| |||||||||| |   |||||||||||    
T  3425555 gattctatagtccaaaagttttccacacctttcggattacataatccggatccatctattcataactggcatcatcatccatcatggtggatgaagtgcc 3425456  T
Q  313 aaaaa 317  Q
    |||||    
T  3425455 aaaaa 3425451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26938990 - 26939030
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaac 58  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  26938990 catgatatgtctgtttggaagcaagcaaaatgcgccaaaac 26939030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 53668222 - 53668135
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    |||||| |||||||||| |||||||   ||||| |||| |||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  53668222 gattatgtaatccggaatcatcatttttcaccctattt-gttgactttcaacggggtgatttacatatttcggattatataatccggaa 53668135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 903108 - 903176
Alignment:
Q  45 aaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatta 113  Q
    ||||||||||||||| || ||| || |||||||  ||||||||||||||| |||||||| | |||||||    
T  903108 aaatgcgccaaaacagagtctcggctaaaacagatagcttctgcctctgtgctgatgcagttcggatta 903176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 35421365 - 35421417
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  35421365 tttgttgactttcaacggggtgatttacatatttcggattatataatccggaa 35421417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 5955553 - 5955493
Alignment:
Q  61 aggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattcc 121  Q
    ||||||||||||||||    |||| ||||| || || ||||||||||||||||||||||||    
T  5955553 aggctcagcaaaaacaaatggcttatgcctttgaaccgatgcattccggattataaattcc 5955493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 8601984 - 8601621
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||   |||||||||||||||||||||||||||||||||||||    
T  8601984 catgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcaacaaaaacagatggcttctgcctctgtactgatgcattccggattataaa 8601885  T
Q  118 ttccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggat 216  Q
    ||||  ||| || ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||    
T  8601884 ttccgaacaaatttatgagattccagattatataatccggaaccatcattcaccacccccttttgttgactttcaacgaggtgatttatac-tttcggat 8601786  T
Q  217 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8601785 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccaccagcatgatgaagtgccaaaa 8601686  T
Q  317 attgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    |   |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  8601685 accacaaaacattccggattatatattctgaaatggttccggattatataatccggactaggggt 8601621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 38341860 - 38342133
Alignment:
Q  23 tatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattcca 122  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||     
T  38341860 tatgtctctttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatggcttctgcctctgtactgatgcattccggattataaattccg 38341959  T
Q  123 gacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttat 221  Q
     |||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  38341960 aacagatttatgagattccagattatataatccggaaccatcattcaccacccccttttgttgactttcaacggggtgatttacacctttcgaattttat 38342059  T
Q  222 aatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatc 296  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38342060 aatcc-gaaattctctaaattgttcggattgtataatccggatccacctattcataacttacatcttcatccatc 38342133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 46808482 - 46808663
Alignment:
Q  87 gcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttga 185  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||    
T  46808482 gcctctgtactgatgcattccggattacaaattccggacagatttatgagattccgtattatataatccggaaccaccattcaccacccc-ttttgttga 46808580  T
Q  186 ctttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatc 269  Q
    ||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  46808581 ctttcaacg-ggtgatttacaccttttggattttataatcctgaaattctctaaattgttcggattgtataattcggatccatc 46808663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 42724540 - 42724899
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||   ||||||||||||||||||||||| ||||||||||| |    
T  42724540 catgatatgtctgtttggaagcaagcaaaatgcgccaaaatagaggctcagccaaaacagatggcttctgcctctgtactgatgcagtccggattatata 42724639  T
Q  118 ttccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggat 216  Q
     | | ||||| | ||  | ||| || ||||||||||| |||| |||| |||||  |||| |||||||||||||||||  |||||| ||||| |||||||     
T  42724640 gttctgacagttttagcacattccgcattatataatctggaatcatcgttcac--cccccttttgttgactttcaacggggtgatctacacgtttcggac 42724737  T
Q  217 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcat-gatgaagtgccaaa 315  Q
    | ||||||||||||  | ||||| || |||| |||| |||||||||| | || |||||||||||  |||| |||||||||||  | ||||||||||||||    
T  42724738 tatataatccggaagctatctaactttttcgaattgcataatccggaacaatatattcataactggcatcatcatccatcagggtggatgaagtgccaaa 42724837  T
Q  316 aattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactag 377  Q
    |    | ||  | || ||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  42724838 atacacgaataaatctggattatatattccggaatggttccggattatataatccggactag 42724899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 316
Target Start/End: Original strand, 39349625 - 39349888
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||||| | ||| ||||  | ||| |  || || ||||||||||    
T  39349625 aaaacagaggctcagccaaaacagatggcttctgcctctgtactgatgcattccggattatataatccggacatgtttatcactttccggattatataat 39349724  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    |||||||| || ||||||||||  |||||||||||||||||  ||||||||||||  |||||||| |||||| |||||||  | |||| ||||||||||     
T  39349725 ccggaaccgtcgttcaccacccacttttgttgactttcaacggggtgatttacactattcggattatataattcggaaatgatataaaatgttcggatta 39349824  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||||||| ||||||||||| | | |||||||||| ||| ||  ||||||||| ||||||    
T  39349825 tataatccggattcatctattcatcagtgacatcttcattcattagggtgatgaagttccaaaa 39349888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 38342127 - 38342245
Alignment:
Q  263 atccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggatta 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||| ||||||| ||||||||| |||||||    
T  38342127 atccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaaacattctggattatatattccggaatggttccggatta 38342226  T
Q  363 tataatccggactaggggt 381  Q
    |||||||||||||||||||    
T  38342227 tataatccggactaggggt 38342245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 54 - 315
Target Start/End: Original strand, 43726064 - 43726326
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| |||||| || |||||||   ||||||||||  |||||||||||||| | |||||| | ||| ||||| | ||| |  ||||| ||||||||||    
T  43726064 aaaacataggctcggccaaaacagatggcttctgccttagtactgatgcattctgaattatataatccggacaggtttatcacttttcggattatataat 43726163  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    ||||||||||| ||||||||||  |||||||||||||||||  ||||||||||||  |||||||| ||||||||||||||  | ||||  ||||  |||     
T  43726164 ccggaaccatcgttcaccacccacttttgttgactttcaacggggtgatttacactattcggattatataatccggaaatgatataaaaagttcaaatta 43726263  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaa 315  Q
    |||||| ||||| ||||||||||| ||| |||||||||| ||||||  ||||||||| |||||    
T  43726264 tataattcggattcatctattcattactgacatcttcattcatcagggtgatgaagttccaaa 43726326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 3526446 - 3526359
Alignment:
Q  177 ttttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggat 264  Q
    ||||||||| |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3526446 ttttgttgagtttcaacggggtgatttacacatttcggattttataatccggaaattctctaaattgttcggattgtataatccggat 3526359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 46808657 - 46808757
Alignment:
Q  290 atccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggtgttctggg 389  Q
    ||||||||||||||||||||||||||||   ||||||| | || ||| ||||||| ||||||||| |||||||||||||| ||||||||||| || ||||    
T  46808657 atccatcagcatgatgaagtgccaaaaaccacaaaacaattcgaattatatattccggaatggttccggattatataatctggactaggggtattttggg 46808756  T
Q  390 g 390  Q
    |    
T  46808757 g 46808757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 298
Target Start/End: Original strand, 51898600 - 51898821
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccc---ca 176  Q
    |||| |||||||||||||||| | ||||||||||| | ||  ||||| |  || | |||| | |||||||||||||||| |||| |||||| |||   |     
T  51898600 gcttttgcctctgtactgatgtaatccggattatataatctggacaggtaaatcacattttggattatataatccggaatcatcgttcaccccccatccc 51898699  T
Q  177 ttttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcat 276  Q
    |||||||||||||||||  |||||||||||| ||||||||| ||||||||||||  | |||||  | |||| ||| ||||||| ||| | || |||||||    
T  51898700 ttttgttgactttcaacggggtgatttacacgtttcggattatataatccggaagctatctaaccttttcgaattatataatctggaacaatatattcat 51898799  T
Q  277 aacttacatcttcatccatcag 298  Q
    || |  |||| |||||||||||    
T  51898800 aaatggcatcatcatccatcag 51898821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 3526503 - 3526450
Alignment:
Q  24 atgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacag 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  3526503 atgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcaacaaaaacag 3526450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 51898554 - 51898595
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  51898554 catggtatgtttgtttggaagcaagcaaaatgtgccaaaaca 51898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 46808424 - 46808468
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaa 57  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||    
T  46808424 agcggcatgatatgtctgtttggaagcaagcaaattgcgccaaaa 46808468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 26981528 - 26981591
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||||| ||||||||| |||||||   |||||||||||||| |||||||| | |||||||||||    
T  26981528 aaaacaaaggctcagccaaaacagatggcttctgcctctgtgctgatgcagttcggattataaa 26981591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 50547566 - 50547926
Alignment:
Q  12 tagcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggat 111  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  50547566 tagcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatagcttctgcctctgtactgatgcattccggat 50547665  T
Q  112 tataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctt 210  Q
    ||||||||||  |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||    
T  50547666 tataaattccgaacagatttatgagattccagattatataatccggaaccatcattcaccacccccttttgttgactttcaatggggtgatttacacctt 50547765  T
Q  211 tcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtg 310  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  50547766 tcggattttataatccgaaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagtataatgaagtg 50547865  T
Q  311 ccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccg 371  Q
    ||||||    |||||||||||||||| ||||||   |||||||| || |||||||||||||    
T  50547866 ccaaaatccacaaaacattccggattatatatttcagaatggttccgaattatataatccg 50547926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 43626831 - 43626478
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatt 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||   |||||||||||||||||||||||||||| |||    
T  43626831 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcaacaaaaacagatggcttctgcctctgtactgatgcattccgaatt 43626732  T
Q  113 ataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacaccttt 211  Q
    ||||||||| ||||||| |||| |||| || |||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||            
T  43626731 ataaattccggacagatttatgtgattccggattatataattcggaaccatcattcaccacccc-ttttattgactttcaactgggtgattt-------- 43626641  T
Q  212 cggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgc 311  Q
           ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43626640 -------tataatccggaaagtctctaaatagttcggattgtataatccgaatccatctattcataacgtacatcttcatccatcagcatgatgaagtgc 43626548  T
Q  312 caaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||   |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  43626547 caaaaaccacaaaacattccggattatatattctggaatgtttccggattatataatccggactaggggt 43626478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 26114991 - 26114774
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatt 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||| ||||    
T  26114991 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatggctcctgcctctgtactgatgcattccagatt 26114892  T
Q  113 ataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacaccttt 211  Q
    ||||||||| ||||||| ||||| ||| | |||||||||||| |||||||||||||||||| || |||||||||||||||||  ||||||||||| ||||    
T  26114891 ataaattccggacagatttatgatattccagattatataatctggaaccatcattcaccactcccttttgttgactttcaacggggtgatttacatcttt 26114792  T
Q  212 cggattttataatccgga 229  Q
    | ||||||||||||||||    
T  26114791 cagattttataatccgga 26114774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 81 - 381
Target Start/End: Original strand, 35067332 - 35067634
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||||||||||||||||||| ||||||||||| | ||| ||||||| ||| | ||| || ||||| ||||||||||||||| ||||||||||  |||    
T  35067332 gcttctgcctctgtactgatgcagtccggattatataatccggacagatttataacattccggattatgtaatccggaaccatcgttcaccacccacttt 35067431  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    ||||||||||||||  ||||||||||||  |||| ||| ||||||||||||||  | |||| |||||||||| |||||||||||||||||||||||| ||    
T  35067432 tgttgactttcaacggggtgatttacactattcgaattatataatccggaaatgatataaaatgttcggattatataatccggatccatctattcattac 35067531  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctgg-aatggtttcggattatataatccggactagg 378  Q
    | ||||||||||||||||   ||||||||||||||||     |||| |||| ||| | |||||||||| ||||||| |||||||  ||||||||||||||    
T  35067532 tcacatcttcatccatcaaggtgatgaagtgccaaaatccataaaatattctggaatttatattctggaaatggttccggattaggtaatccggactagg 35067631  T
Q  379 ggt 381  Q
    |||    
T  35067632 ggt 35067634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 316
Target Start/End: Complemental strand, 32296027 - 32295767
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| |||||| || |||||||   ||||||||||||||||||||||||||| ||||||| | ||| ||||| | ||| |  || || ||||||||||    
T  32296027 aaaacagaggctcggccaaaacagatggcttctgcctctgtactgatgcattccagattatataatccggacaggtttatcactttccggattatataat 32295928  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    |||||||| || ||||||||||  |||||||||||||||||  ||||||||||||  ||| |||   |||||||||||||  | |||| |||| |||||     
T  32295927 ccggaaccgtcgttcaccacccacttttgttgactttcaacggggtgatttacactattcagat---ataatccggaaatgatataaaatgttgggatta 32295831  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||||||| ||||||||||| | |||||||||||||||| ||  ||||||||||||||||    
T  32295830 tataatccggattcatctattcatcatttacatcttcatccatgagggtgatgaagtgccaaaa 32295767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 10887702 - 10888061
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||||||||||| ||| ||||||||| || || ||||||||| ||| || |  |||||||   |||||||| |||||||||||||| ||||||||||| |    
T  10887702 catggtatgtctatttagaagcaagctaa-tgtgccaaaacagaggttcggtcaaaacagatggcttctgcttctgtactgatgcagtccggattatata 10887800  T
Q  118 ttccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggat 216  Q
     ||||||||| |  |  |  || || |||||||||||| |||||||| ||||||||||| |||||||||||||||||  |||||||||||| ||||||||    
T  10887801 atccagacaggttaaccactttacggattatataatccagaaccatcgttcaccacccccttttgttgactttcaacggggtgatttacacttttcggat 10887900  T
Q  217 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcat-gatgaagtgccaaa 315  Q
    | |||||||||||| || ||||   | |||||||| ||||||||| || ||| |||||||||||  |||| |||||||| ||  | ||||||||||||||    
T  10887901 tatataatccggaagttatctacccttttcggattatataatccgaattcatatattcataactctcatcatcatccattagagtggatgaagtgccaaa 10888000  T
Q  316 aattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggacta 376  Q
    |    | ||  | |||||| |  ||||||  ||||||||||||||||| ||||||||||||    
T  10888001 atccacgaataaatccggaattaatattccagaatggtttcggattatgtaatccggacta 10888061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 26114789 - 26114656
Alignment:
Q  248 gattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctgg 347  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||  ||||| |||||||  |    
T  26114789 gattttataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaaacattatggattatatattccag 26114690  T
Q  348 aatggtttcggattatataatccggactaggggt 381  Q
    ||||||| |||||||||||||||| |||||||||    
T  26114689 aatggttccggattatataatccgaactaggggt 26114656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 316
Target Start/End: Complemental strand, 28792167 - 28791931
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatt-tcgattatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||||||||||||||||||||||||||||||| | |||  |||  | ||| |  || | |||||||||||| |||||| || |||||||| |  |||    
T  28792167 gcttctgcctctgtactgatgcattccggattatataatccgaacatgtttatcactttctggattatataatctggaaccgtcgttcaccactcacttt 28792068  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    ||||||||||||||  ||||||||||||  |||||||| ||||||||||||||  | |||| |||||||||| ||||||||| || ||||||||||| ||    
T  28792067 tgttgactttcaacggggtgatttacactattcggattatataatccggaaatgatataaaatgttcggattatataatccgaattcatctattcatcac 28791968  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    | ||||||||||||||||   ||||||| ||||||||    
T  28791967 tgacatcttcatccatcatggtgatgaaatgccaaaa 28791931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 42093401 - 42093227
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||||| | | | ||||| | ||| |  || || ||||||||||    
T  42093401 aaaacagaggctcagccaaaacagatggcttctgcctctgtactgatgcattccggattatataattcggacaggtttatcactttccggattatataat 42093302  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccg 227  Q
    ||||||||||| ||||||||||  |||||||||||||||||  ||||||||||||  |||||||| |||||||||    
T  42093301 ccggaaccatcgttcaccacccacttttgttgactttcaacggggtgatttacactattcggattatataatccg 42093227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 35067281 - 35067327
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||    
T  35067281 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaaca 35067327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 42093244 - 42093190
Alignment:
Q  244 ttcggattgtataatccggatccatctattcataacttacatcttcatccatcag 298  Q
    |||||||| ||||||||| || ||||||||||| ||| |||||||||||||||||    
T  42093244 ttcggattatataatccgaattcatctattcattactgacatcttcatccatcag 42093190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 46270242 - 46269874
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatt 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||    ||||||||| |||||||||||||||| ||||    
T  46270242 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaatagaggctcagccaaaacagatgacttctgcctttgtactgatgcattccagatt 46270143  T
Q  113 ataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacaccttt 211  Q
    ||||||||| ||||||| ||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  46270142 ataaattccggacagatttatgagattccggattatataattcggaaccatcattcaccacccccttttgttgactttcaactgggtgatttacaccttt 46270043  T
Q  212 cggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgc 311  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46270042 cagattttataatccggaaattctctaaattgttcggat-gtataatccggatccatctattcataacttacatcttcatctatcagcatgatgaagtgc 46269944  T
Q  312 caaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||   || |||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  46269943 caaaaaccacataacattccagattatatattccggaatagtttcggattatataatccggactaggggt 46269874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 47249304 - 47249667
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  47249304 catgatatgtttgtttggaagcaagcaaaatgcgccaaaatagaggctcagcaaaaacagatggcttctgcctctgtactgatgcattccggattataaa 47249403  T
Q  118 ttccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggat 216  Q
    || | ||||||| ||||||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||| ||| |||||||||||    
T  47249404 tttcggacagatttatgagattccggattatataatccagaaccatcattcaccacccc-ttttgttgactttcaccgcggtgacttatacctttcggat 47249502  T
Q  217 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47249503 tttataatctgaaaattctctaaattgttcggattgtataattcggatccatctattcataacttacatcttcgtccatcagcatgatgaagtgccaaaa 47249602  T
Q  317 attgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    |   ||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  47249603 accacaaaatattccggattatatattccggaatggttccggattatataatccggactaggggt 47249667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 142 - 381
Target Start/End: Original strand, 14966293 - 14966532
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaat 241  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||    
T  14966293 gattatataatgcggaaccatcattcaccacccccttttgttgactttcaacagggtgatttacaccttttggattttataatctggaaattctctaaat 14966392  T
Q  242 tgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtata 341  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||| ||||    
T  14966393 tgttcggattgtataatccggatccatttattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaaacattctggattatata 14966492  T
Q  342 ttctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||||| |||  || ||||||||||||||||||||||    
T  14966493 ttctggaattgttctgggttatataatccggactaggggt 14966532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 142 - 381
Target Start/End: Original strand, 15395765 - 15396004
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaat 241  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||    
T  15395765 gattatataatgcggaaccatcattcaccacccccttttgttgactttcaacagggtgatttacaccttttggattttataatctggaaattctctaaat 15395864  T
Q  242 tgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtata 341  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||| ||||    
T  15395865 tgttcggattgtataatccggatccatttattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaaacattctggattatata 15395964  T
Q  342 ttctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||||| |||  || ||||||||||||||||||||||    
T  15395965 ttctggaattgttctgggttatataatccggactaggggt 15396004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 81 - 381
Target Start/End: Complemental strand, 31187409 - 31187107
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagat-ttcgattatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| || |||||||||||||||||||||| |||||||  || |||    
T  31187409 gcttctgcctctgtactgatgcattccggattataaaatccagacagatttataagatgttggattatataatccggaaccatcgttcaccatacccttt 31187310  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    |||||||||||||  |||||||||||||  || | ||| ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  31187309 tgttgactttcaatgaggtgatttacactatttgaattatataatccggaaattatctaaaatgttcggattatataatccggatccatctattcataac 31187210  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggttt-cggattatataatccggactagg 378  Q
    |||||||||||||||||||| ||||||||||||||||    ||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||| |    
T  31187209 ttacatcttcatccatcagcctgatgaagtgccaaaatccacaaaacattccagaatttatattccggaatggtttccggattatataatccggactaag 31187110  T
Q  379 ggt 381  Q
    |||    
T  31187109 ggt 31187107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 83 - 378
Target Start/End: Original strand, 39975092 - 39975388
Alignment:
Q  83 ttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattttg 181  Q
    |||| ||||| |||||||||||| |||||||  || ||| ||||||| ||| ||||| || ||||||||||||| |||||||||||| |||||| |||||    
T  39975092 ttctccctctttactgatgcatttcggattaataaatccggacagatttataagattccggattatataatccgaaaccatcattcatcacccccttttg 39975191  T
Q  182 ttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataactt 281  Q
    ||||||||||||  |||||||||||||||||| |||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  39975192 ttgactttcaacggggtgatttacacctttcgaattttagaatctggaaattctctaaagtgttcggattatataatccggatccatctattcataactt 39975291  T
Q  282 acatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactagg 378  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||||||| ||| |||| |||  | || |||| |  ||||||||||| ||||||||    
T  39975292 acatcttcatccatcagcatactgaagtgccaaaattcacaaaacattctggaatgtacatttcgaaacggttccaaattatataatctggactagg 39975388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 14966202 - 14966299
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattata 115  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  14966202 catgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatggcttctgcctctgtactgatgcattccggattata 14966299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 15395674 - 15395771
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattata 115  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  15395674 catgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatggcttctgcctctgtactgatgcattccggattata 15395771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31187460 - 31187414
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31187460 agcgacatgatatgtctgtttgaaagcaagcaaaatgcgccaaaaca 31187414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 39975039 - 39975085
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  39975039 agcgacatgatatatctgtttggaagcaagcaaaatgcgccaaaaca 39975085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 5640624 - 5640676
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  5640624 tttgttgactttcaacggggtgatttacatatttcggattatataatccggaa 5640676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 3406958 - 3406590
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatt 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  3406958 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagcaaaaacagatggcttctgcctctgtactgatgcattccggatt 3406859  T
Q  113 ataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacaccttt 211  Q
    ||||||||||||||||| ||||||||| | |||||||||||| |||||||||||| |||||||| ||||||||||||||||   |||||||||||| |||    
T  3406858 ataaattccagacagatttatgagattccggattatataatctggaaccatcatttaccacccccttttgttgactttcaatggggtgatttacacattt 3406759  T
Q  212 cggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgc 311  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3406758 cagattttataatccggaaattctctaaattgttc-gattgtataatctggatccatctattcataacttacatcttcatccctcaacatgatgaagtgc 3406660  T
Q  312 caaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||   |||||||||  ||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  3406659 caaaaaccacaaaacattatggattatatattctggaatggttgcagattatataatccggactaggggt 3406590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 9676528 - 9676615
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    |||||| |||||||||| |||||||   ||||| |||| |||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  9676528 gattatgtaatccggaatcatcatttttcaccctattt-gttgactttcaacggggtgatttacatatttcggattatataatccggaa 9676615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 34319187 - 34319099
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaa 231  Q
    |||| |||| |||||||  ||||||  ||||||||||| |||||||||||||  | |||||||||| |||||||||  ||||||||||||    
T  34319187 gattctatagtccggaaaaatcatttcccaccccattt-gttgactttcaacgggatgatttacacatttcggattacataatccggaaa 34319099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 31074954 - 31074902
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  31074954 tttgttgactttcaacggggtgatttacatatttcggattatataatccggaa 31074902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 35740158 - 35740207
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccg 227  Q
    ||||||||||||||||  |||||||||||  ||||||||| |||||||||    
T  35740158 tttgttgactttcaacggggtgatttacatatttcggattatataatccg 35740207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 34660740 - 34660377
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||| | |||||||||   |||||||||||||||||||||||||| ||||||||||    
T  34660740 catgatatgtctgtttggaagcaagcaaaatgcgccaaaatagaggcttatcaaaaacagattgcttctgcctctgtactgatgcattctggattataaa 34660641  T
Q  118 ttccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggat 216  Q
    |||   |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||| |||    
T  34660640 ttctgtacagatttatgagattccagattatataatccggaaccatcattcaccacccc-ttttgtttactttcaacggggtgatttacacctttcagat 34660542  T
Q  217 tttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34660541 tttataattcggaaattctctaaactgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 34660442  T
Q  317 attgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    |   |||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  34660441 accacaaaacattccggattatatattccggaatggttccggattatataattcggactaggggt 34660377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 5344880 - 5345242
Alignment:
Q  12 tagcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggat 111  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||| |||    
T  5344880 tagcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcaacaaaaacagactgcttctgcctctgtactgatgcattcctgat 5344979  T
Q  112 tataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctt 210  Q
    |||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||    
T  5344980 tataaattccggacagatttatgagattccagattatataatccggaaccatcattcactacccccttttgttgactttcaacg-ggtgatttacacctt 5345078  T
Q  211 tcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtg 310  Q
    ||||||||||||||||  |||||||| |||  |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5345079 tcggattttataatccaaaaattctcgaaagcgttcagattatataatccggatccatttattcataacttacatcttcatccatcagcatgatgaagtg 5345178  T
Q  311 ccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggac 374  Q
    ||||||     ||||| |||| || ||||||||| ||| ||||| |||||||||||||||||||    
T  5345179 ccaaaatccataaaactttccagaatgtatattcaggagtggttccggattatataatccggac 5345242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 125 - 374
Target Start/End: Original strand, 43097157 - 43097407
Alignment:
Q  125 cagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataa 223  Q
    ||||| ||||||||| | |||||||||||| ||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||| ||||||||||    
T  43097157 cagatttatgagattccagattatataatctggaaccatcattcaccatccccttttgttgactttcaacgatgtgatttacacctttcagattttataa 43097256  T
Q  224 tccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaa 323  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||    
T  43097257 tccggaaattctctaaagtgttcggattgtataatccggattcatctattcataacttacatcttcattcatcagcatgatgaagtgccaaaaaccgcaa 43097356  T
Q  324 aacattccggattgtatattctggaatggtttcggattatataatccggac 374  Q
    || |||||| ||| ||||||| ||||||||| ||||||| |||||||||||    
T  43097357 aatattccgaattatatattccggaatggttccggattagataatccggac 43097407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 150 - 390
Target Start/End: Complemental strand, 44997299 - 44997059
Alignment:
Q  150 aatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcgga 249  Q
    |||| |||||||||||||||| |||  |||||||||||||||||  ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||    
T  44997299 aatctggaaccatcattcaccgccctcttttgttgactttcaacggggtgatttacacctttcagattttataattcggaaattctctaaattgtttgga 44997200  T
Q  250 ttgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctggaa 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||| ||| || |||||    
T  44997199 ttgtataatccggatccatctattcataacttacatcttcatccatcaacatgatgaagtgccaaaaaccacaaaacattccggattatatgttatggaa 44997100  T
Q  350 tggtttcggattatataatccggactaggggtgttctgggg 390  Q
    ||||| |||||||||||||||||||||||||| || |||||    
T  44997099 tggttccggattatataatccggactaggggtattttgggg 44997059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 81 - 316
Target Start/End: Complemental strand, 40521897 - 40521661
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccattt 179  Q
    |||| |||||||||||||||||||| ||||||||| | ||| ||||| | ||| |  ||||| ||||||||||||||||||||| ||||||||||  |||    
T  40521897 gcttttgcctctgtactgatgcatttcggattatataatccggacaggtttatcacttttcggattatataatccggaaccatcgttcaccacccacttt 40521798  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    ||||||||||||||  ||||||||||||  |||||||| |||||||   ||||  | |||| |||||| ||| |||||||||||| ||||||||||| ||    
T  40521797 tgttgactttcaacggggtgatttacactattcggattatataatctcaaaatgatataaaatgttcgaattatataatccggattcatctattcatcac 40521698  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    | ||||||||||||||||   ||||||||||||||||    
T  40521697 tgacatcttcatccatcaaggtgatgaagtgccaaaa 40521661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 23 - 298
Target Start/End: Original strand, 42279352 - 42279624
Alignment:
Q  23 tatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattcca 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    ||||||||||||| ||||||||| ||||||||||| | |||     
T  42279352 tatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagccaaaacatatggcttctgcctctgcactgatgcagtccggattatataatccg 42279451  T
Q  123 gacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttat 221  Q
    || |  | ||  | ||| | ||||||||||||||||| |||| |||||| ||||    ||||||||||||||  |||||||||||| |||| |||| |||    
T  42279452 gataagtttagcacattccggattatataatccggaatcatcgttcaccccccc----tgttgactttcaacggggtgatttacacgtttcagattatat 42279547  T
Q  222 aatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcag 298  Q
    |||||||||  |  |||| |  ||| |||| ||||||||||| | || |||||||||||  |||| |||||||||||    
T  42279548 aatccggaagctacctaactgtttcagattatataatccggaacaatatattcataactggcatcatcatccatcag 42279624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 316
Target Start/End: Original strand, 36833471 - 36833707
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||| ||||||||||||| | |||| |||||||| ||| ||||||| ||| | ||| | ||||||| | | |||||||||| | ||||| ||  |||    
T  36833471 gcttctgtctctgtactgatgtagtccgaattataaaatccggacagatttataacattcccgattataaatttcggaaccatcgtccaccatccacttt 36833570  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    |||| ||||||||   ||||||||||||  ||| |||| ||||||||||||||  | |||| |||||||||| |||||| ||||||||||||||||| ||    
T  36833571 tgttaactttcaatggggtgatttacactattcagattatataatccggaaatgatataaaatgttcggattatataattcggatccatctattcattac 36833670  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    | ||||||||||||||||   ||||||||| ||||||    
T  36833671 tgacatcttcatccatcatggtgatgaagttccaaaa 36833707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 44997398 - 44997297
Alignment:
Q  17 acatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataa 116  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||| |||||||||||||| |||||||||    
T  44997398 acatgatatgtctgattggaagcaagcaaaatgcgccaaaacaaaggctcagcaaaaacagatggcttctgcctccgtactgatgcattctggattataa 44997299  T
Q  117 at 118  Q
    ||    
T  44997298 at 44997297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 14088858 - 14088775
Alignment:
Q  30 gtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatta 113  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||   ||||||||||||||  ||||||||| |||||||    
T  14088858 gtttagaagcaagataaatgcgccaaaacagaggctcagccaaaacagatggcttctgcctctgtgttgatgcatttcggatta 14088775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 36833425 - 36833464
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaa 57  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  36833425 catgatatgtctgtttggaagcaagcaaaatgcgccaaaa 36833464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 31382681 - 31382629
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  31382681 tttgttgactttcaacggggtgatttacaaatttcggattatataatccggaa 31382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 26221194 - 26221115
Alignment:
Q  149 taatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    |||||||||| |||||||| ||||| ||||  ||||||||||||| ||||||||||||| |||  ||||  |||||||||||    
T  26221194 taatccggaagcatcattc-ccacctcattc-gttgactttcaacgaggtgatttacacattttagattacataatccggaa 26221115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 29359945 - 29359581
Alignment:
Q  13 agcgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggatt 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||   | ||||||||||      |||||| |||||||    
T  29359945 agcggcatgatatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcatcaaaaacagatggtttctgcctctc-----atgcataccggatt 29359851  T
Q  113 ataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacaccttt 211  Q
    ||||||||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||  | ||||||||||||||    
T  29359850 ataaattccggacagatttatgagattccagattatataatccgaaaccatcattcaccacccccttttgttgactttcaacgggatgatttacaccttt 29359751  T
Q  212 cggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgc 311  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  29359750 cggattttataatccgggaattctctaaattgttccgattgtataatctggatccatctattcataacttacatcatcatccatcagcatgatgaagttc 29359651  T
Q  312 caaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||   |||||||||||||||| ||||||| ||  || || | |||||||||||||||| |||||||    
T  29359650 caaaaaccacaaaacattccggattatatattccggtctgtttccagattatataatccggattaggggt 29359581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 35335824 - 35336194
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaa 117  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||   ||||||||||||||||||||||| ||||||||||| |    
T  35335824 catgatatgtctgtttggaagcaagcaaattgcgccaaaacagaggctcagccaaaacagatggcttctgcctctgtactgatgcagtccggattatata 35335923  T
Q  118 ttccagacagatgtatgaga-tttcgattatataatccggaaccatcattcac----caccccattttgttgactttcaactaggtgatttacacctttc 212  Q
     ||| ||||  | ||  | | ||| ||||||||||| ||||| |||| |||||    | |||| |||||||||||||||||  |||||||||||  ||||    
T  35335924 atccggacatgtttagcacattttggattatataattcggaatcatcgttcacccctcgcccccttttgttgactttcaacggggtgatttacaagtttc 35336023  T
Q  213 ggatt-ttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcat-gatgaagtg 310  Q
    |||||  ||||||||||||  | ||||| || |||||||| |||||||| || | || |||||||||||  |||| |||||||||||  | |||||||||    
T  35336024 ggattaatataatccggaagctatctaactttttcggattatataatccagaacaatatattcataactggcatcatcatccatcagggtggatgaagtg 35336123  T
Q  311 ccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatataatccggactaggggt 381  Q
    ||||||    | ||  | |||||| |  |||||| ||||||| |||| |||||||||||||||||||||||    
T  35336124 ccaaaatacacgaataaatccggaattaatattccggaatgggttcgaattatataatccggactaggggt 35336194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 54 - 316
Target Start/End: Original strand, 6660409 - 6660672
Alignment:
Q  54 aaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataat 152  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||| ||||||||||||| | ||| ||||| | ||| |  || || ||||||||||    
T  6660409 aaaacagaggctcagccaaaacagatggcttctgcctctgtactgatgaattccggattatataatccggacaggtttatcactttccggattatataat 6660508  T
Q  153 ccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattg 252  Q
    | |||||| || ||||||||||  |||||||||||||||||  | ||||||||||   ||| ||| ||||||||| ||||| | |||| |||||| |||     
T  6660509 ctggaaccgtcgttcaccacccacttttgttgactttcaacgggatgatttacactagtcgaattatataatccgaaaattatataaaatgttcgaatta 6660608  T
Q  253 tataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||   ||||||||||||||||    
T  6660609 tataatccggattcatctattcatcactgacatcttcatccatcaaggtgatgaagtgccaaaa 6660672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 81 - 390
Target Start/End: Original strand, 10016600 - 10016910
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcga-ttatataatccggaaccatcattcaccaccccattt 179  Q
    |||||||||| ||||||||| || ||||||||||| | ||| |||| || ||| | ||||||| |||||||||||||||| ||| ||||||||||  |||    
T  10016600 gcttctgcctatgtactgatacagtccggattatatactccggacatatttataacatttcgaattatataatccggaacaatcgttcaccacccacttt 10016699  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataac 279  Q
    |||||| |||||||  |||||||||||   |||||||| ||||||| ||||||  | |||| |||||| ||| |||||||||||||||||||||||| ||    
T  10016700 tgttgattttcaacagggtgatttacattattcggattatataatc-ggaaatgatataaaatgttcgtattatataatccggatccatctattcattac 10016798  T
Q  280 ttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatattctg-gaatggtttcggattatataatccggactagg 378  Q
      |||||||||||||||||  |||||||||| |||||    ||||| | |||| | | ||||||| |  ||||||  |||||||| ||||||||||||||    
T  10016799 cgacatcttcatccatcagggtgatgaagtgtcaaaatccacaaaataatccgaaatttatattccgaaaatggtcccggattatgtaatccggactagg 10016898  T
Q  379 ggtgttctgggg 390  Q
    ||| || |||||    
T  10016899 ggtattttgggg 10016910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 381
Target Start/End: Original strand, 36340451 - 36340764
Alignment:
Q  68 gcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcatt 166  Q
    |||||||||| | ||||||||||||||| ||||||| ||||||||||| | ||| ||||  | ||  | ||| || |||||||||| ||| | |||| ||    
T  36340451 gcaaaaacagagggcttctgcctctgtattgatgcagtccggattatataatccggacatgtttagcacattccggattatataattcggcatcatcgtt 36340550  T
Q  167 caccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatcc 266  Q
    |||| |||  ||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||  | ||||| || |||||||| ||||||||||| |     
T  36340551 cacccccc--ttttgttgactttcaacgaggtgatttacacgtttcagattatataatccggaagctatctaagtttttcggattatataatccggaaca 36340648  T
Q  267 atctattcataacttacatcttcatccatcagcat-gatgaagtgccaaaaattgcaaaacattccggattgtatattctggaatggtttcggattatat 365  Q
    || ||||||||||| ||||| |||||||||||  | ||| |||||||||||    | ||  | |||||| |  |||||| ||||||| ||| ||||||||    
T  36340649 atatattcataactgacatcatcatccatcagggtggatcaagtgccaaaatacacgaataaatccggaattaatattcgggaatggattcagattatat 36340748  T
Q  366 aatccggactaggggt 381  Q
    ||||||||||||||||    
T  36340749 aatccggactaggggt 36340764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 82 - 316
Target Start/End: Original strand, 38366393 - 38366628
Alignment:
Q  82 cttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttcg-attatataatccggaaccatcattcaccaccccatttt 180  Q
    ||||||||| |||| |||||||||| |||||||| | ||| ||||  | ||| |  || || |||||||||||||||||| || ||||||||||  ||||    
T  38366393 cttctgcctttgtagtgatgcattctggattatataatccggacatgtttattactttccggattatataatccggaaccgtcgttcaccacccactttt 38366492  T
Q  181 gttgactttcaactaggtgatttacacctttcggattttataatccggaaattctctaaattgttcggattgtataatccggatccatctattcataact 280  Q
    |||||||||||||  ||||||||||||  |||| ||| |||||| || ||||  | |||| |||| ||||| |||||| | ||| ||||||||||| ||     
T  38366493 gttgactttcaacggggtgatttacactattcgaattatataattcgaaaatgatataaaatgtttggattatataattcagattcatctattcatcacc 38366592  T
Q  281 tacatcttcatccatcagcatgatgaagtgccaaaa 316  Q
     ||||||||||||||||| |||||||||||||||||    
T  38366593 gacatcttcatccatcaggatgatgaagtgccaaaa 38366628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 30619096 - 30619386
Alignment:
Q  23 tatgtctgtttggaagcaagcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattataaattcca 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||   |||||||||||||| |||||||| ||| ||||||| | |||     
T  30619096 tatgtctgtttggaagcaagcaaaatgcgccaaaacagaggctcagccaaaacagatggcttctgcctctgtcctgatgcagtccagattatataatcct 30619195  T
Q  123 gacagatgtatgagatttcgattatataatccggaaccatcattcacc--accccattttgttgactttcaactaggtgatttacacctttcggatttta 220  Q
    ||||| | ||  | |||  |||||| ||      || |||| ||||||   ||||  |||||||||||||||   ||| |||||||| ||||||||| ||    
T  30619196 gacaggtttagcacattcggattatgta------aatcatcgttcaccctccccccctttgttgactttcaatggggtcatttacacgtttcggattata 30619289  T
Q  221 taatccggaaattctctaaattgttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcat-gatgaagtgccaaaa 316  Q
    ||||||||||  | ||||| || |||||| | ||||||||| | | || ||||||||| |  |||| |||||||||||  | |||||||||||||||    
T  30619290 taatccggaagctatctaactttttcggaatatataatccgtaacaatatattcataaatggcatcatcatccatcagggtggatgaagtgccaaaa 30619386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10016554 - 10016595
Alignment:
Q  18 catggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  10016554 catgatatgtctgtttggaagtaagcaaaatgcgccaaaaca 10016595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 17220237 - 17220164
Alignment:
Q  42 gcaaaatgcgccaaaacacaggctcagcaaaaacagggagcttctgcctctgtactgatgcattccggattata 115  Q
    ||||||||| |||||||| ||||||||| |||||||   ||||||||||||||  |||| || | |||||||||    
T  17220237 gcaaaatgcaccaaaacagaggctcagccaaaacagatggcttctgcctctgtgttgatacaattcggattata 17220164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 6941125 - 6941267
Alignment:
Q  81 gcttctgcctctgtactgatgcattccggattataaattccagacagatgtatgagatttc-gattatataatccggaaccatcattcaccaccccattt 179  Q
    ||||||||||||||||||||||| ||||||||||  | | | |||||   ||| |  |||| |||||||||||||||||||||| ||||||||||| |||    
T  6941125 gcttctgcctctgtactgatgcagtccggattatgcaattcggacaggattatcacttttcagattatataatccggaaccatcgttcaccacccccttt 6941224  T
Q  180 tgttgactttcaactaggtgatttacacctttcggattttata 222  Q
    || |||||||||||  |||||||||||| ||||||||| ||||    
T  6941225 tgctgactttcaacggggtgatttacacttttcggattatata 6941267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 390
Target Start/End: Original strand, 6941255 - 6941401
Alignment:
Q  244 ttcggattgtataatccggatccatctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaattgcaaaacattccggattgtatatt 343  Q
    |||||||| |||| || | ||||||||||||||||||  |||| |||||||||||  ||||||||||||||||      ||  | |||||| |  |||||    
T  6941255 ttcggattatatactctgaatccatctattcataactggcatcatcatccatcagggtgatgaagtgccaaaatccatgaataaatccggaattgatatt 6941354  T
Q  344 ctggaatggtttcggattatataatccggactaggggtgttctgggg 390  Q
    | ||||||| |||||||||||||||||| ||||||||| || |||||    
T  6941355 ccggaatgggttcggattatataatccgaactaggggtattttgggg 6941401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 10901357 - 10901305
Alignment:
Q  178 tttgttgactttcaactaggtgatttacacctttcggattttataatccggaa 230  Q
    ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  10901357 tttgttgactttcaacggggtgatttacatatttcggattatataatccggaa 10901305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 13286570 - 13286656
Alignment:
Q  142 gattatataatccggaaccatcattcaccaccccattttgttgactttcaactaggtgatttacacctttcggattttataatccgga 229  Q
    |||||| | ||||| || |||||||  ||||||||||| |||||||||||||  |||||||||||| ||| |||||  ||||||||||    
T  13286570 gattatgtgatccgaaaacatcattttccaccccattt-gttgactttcaacggggtgatttacacattttggattacataatccgga 13286656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 6941077 - 6941120
Alignment:
Q  15 cgacatggtatgtctgtttggaagcaagcaaaatgcgccaaaaca 59  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||    
T  6941077 cgacatggtatgtctgtttagaagcaagc-taatgcgccaaaaca 6941120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University