View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_6 (Length: 420)
Name: NF8253_high_6
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 40120973 - 40121382
Alignment:
| Q |
11 |
atattattctgccgttacatgtatatatcgcgattagcagacggtcaaacacaaaagaaaggttccaatttcttctcattcctcagctgcctcacacact |
110 |
Q |
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| T |
40120973 |
atattattttgccgttacatgtatatatcgcgattagcagacggtcaaacacaaaagaaaggttccaatttcttctcattcctcagctgcctcacacact |
40121072 |
T |
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| Q |
111 |
taggtcgttagccttctttgaaattcaattccacactcatcaattattattgtcctcatatttattgcccatacacttacaacattaatattcgtcatat |
210 |
Q |
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| T |
40121073 |
taggtcgttagcctttgttgaaattcaattccacactcatcaattattattgtcctcatatttattgcccatacacttacaacattaatattcgtcatat |
40121172 |
T |
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| Q |
211 |
c----tatacctaaatgtatatctcaacataacattaagtat----------nnnnnnnnnnnncactattatacattccaccgtcattagaaaacaaaa |
296 |
Q |
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| T |
40121173 |
ctatatatacctaaatgtatatctcaacataacattaagtataaaaaataaaaataaaaataaacactattatacattccaccgtcattagaaaacaaaa |
40121272 |
T |
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| Q |
297 |
acatatataaaacagaaacatggagtcttattctggctca---tattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatca |
393 |
Q |
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| T |
40121273 |
acatatataaaacagaaacatggagtcttattctggctcatattattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatca |
40121372 |
T |
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| Q |
394 |
atgaaaaatg |
403 |
Q |
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| T |
40121373 |
atgaaaaatg |
40121382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 316 - 403
Target Start/End: Original strand, 40092472 - 40092559
Alignment:
| Q |
316 |
atggagtcttattctggctcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatg |
403 |
Q |
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| T |
40092472 |
atggaatcttattctagctcatattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatg |
40092559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 40124962 - 40125023
Alignment:
| Q |
334 |
tcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatcaat |
395 |
Q |
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| T |
40124962 |
tcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaatggatcaat |
40125023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 40124703 - 40124835
Alignment:
| Q |
47 |
gcagacggtcaa-acacaaaagaaaggttccaatttcttctcattcctcagctgcctcacacacttaggtcgttagccttctttgaaattcaattccaca |
145 |
Q |
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| T |
40124703 |
gcagacggtcaagaca-aaaagaaaggttccaatttcttctaattcctcatattct------atttaggtcgttagcctttgttgaaattcaactccaca |
40124795 |
T |
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| Q |
146 |
ctcatcaatta-ttattgtcctcatatttattgcccatac |
184 |
Q |
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| T |
40124796 |
ctcttgaattatttatttccttcatatttattgctcatac |
40124835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 40092254 - 40092306
Alignment:
| Q |
107 |
cacttaggtcgttagccttctttgaaattcaattccacactcatcaattatta |
159 |
Q |
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|||||||||||| |||||| |||||||| ||||||||| || |||||||||| |
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| T |
40092254 |
cacttaggtcgtcagccttaattgaaatttaattccacaatcttcaattatta |
40092306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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