View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8253_high_7 (Length: 418)
Name: NF8253_high_7
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 43550660 - 43550263
Alignment:
| Q |
1 |
cattgtatacgagaggcgttggagatgaagttggtttcacttgagtcatcagggaaagatttgttgggtgtttgtgtgttgattacttgatttaattggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550660 |
cattgtatacgagaggcgttggagatgaagttggtttcacttgagtcatcagggaaagatttgttgggtgtttgtgtgttgattacttgatttaattggg |
43550561 |
T |
|
| Q |
101 |
ccaagcccacgtgtagttaagaaaaagggaattgtaagcaaatccctaattctacaagcttgtaacagtagtgctgcaacgtgtgaagaacatatcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550560 |
ccaagcccacgtgtagttaagaaaaagggaattgtaagcaaatccctaattctacaagcttgtagcagtagtgctgcaacgtgtgaagaacatatcaaag |
43550461 |
T |
|
| Q |
201 |
ttcctacaattggatggggcactttgttatgaaacgtttaataaggctttgtggtatctactctaagaaccg--nnnnnnnnnnnnnnntttcatcctgc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43550460 |
ttcctacaattggatggggcactttgttatgaaacgtttaataaggctttgtggtatctactctaagaactggtgttgtgtgtgtgtgttttcatcctgc |
43550361 |
T |
|
| Q |
299 |
tgcatgggagcatatcttatgcatcttggtagttccataataaattttttattgttcaattacaggaatttaaaggtttaataggtactaccattctacc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550360 |
----tgggagcatatcttatgcatcttggtagttccataataaatttttgatttttcaattacaggaatttaaaggtttaataggtactaccattctacc |
43550265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 17738042 - 17738152
Alignment:
| Q |
121 |
gaaaaagggaattgtaagcaaatccctaattctacaagcttgtaacagtagtgctgcaacgtgtgaagaacatatcaaagttcctacaattggatggggc |
220 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17738042 |
gaaaaagggaattaaaatcaaatccctaattctacaagcttgtaacagtagtgctgcaacgtgtgaagaacatatcagagttcctacaattggatggggc |
17738141 |
T |
|
| Q |
221 |
actttgttatg |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
17738142 |
actttgttatg |
17738152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 17738209 - 17738253
Alignment:
| Q |
303 |
tgggagcatatcttatgcatcttggtagttccataataaattttt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17738209 |
tgggagcatatcttatgcatcttggtagtcccataataaattttt |
17738253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 17750050 - 17750013
Alignment:
| Q |
360 |
acaggaatttaaaggtttaataggtactaccattctac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17750050 |
acaggaatttaaaggtttaataggtactaccattctac |
17750013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 43582499 - 43582562
Alignment:
| Q |
207 |
caattggatggggcactttgttatgaaacgtttaataaggctttgtggtatctactctaagaac |
270 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||| |||||| || ||||||||| ||||||||| |
|
|
| T |
43582499 |
caatttgatggggcactttgttatgcaacatttactaaggcattatggtatctaatctaagaac |
43582562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17737827 - 17737871
Alignment:
| Q |
1 |
cattgtatacgagaggcgttggagatgaagttggtttcacttgag |
45 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
17737827 |
cattgtatacaagaggcgttggagatgaagttgtgttcacttgag |
17737871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 50897950 - 50897896
Alignment:
| Q |
306 |
gagcatatcttatgcatcttggtagttccataataaattttttattgttcaatta |
360 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||||||| ||||||||||| |
|
|
| T |
50897950 |
gagcatatcttatgcatcatggtggtgccttaataaatttttgcttgttcaatta |
50897896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University