View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_9 (Length: 391)
Name: NF8253_high_9
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 45 - 385
Target Start/End: Original strand, 17283802 - 17284142
Alignment:
| Q |
45 |
ccatacacatgtatgttcacattacattttcatgcaacatagacatcatctaacatcctgcaaacctcaaattttctccacatgtaaaattaaggaatca |
144 |
Q |
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| T |
17283802 |
ccatacacatgtatgttcacattacattttcatgcaacatagacatcatctaacatcccgcaaacctcaaattttctccacatgtaaaattaaggaatca |
17283901 |
T |
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| Q |
145 |
atttcggcacattcgtaaaatagaaggataccaaccttttaacactattacccggttgaaccacacaactaccaataccaacgtcaacattccactttct |
244 |
Q |
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| T |
17283902 |
atttcggcacattcgtaaaatagaaggataccaaccttttaacactattacccggttgaaccacacaactaccaataccaacgtcaacatcccactttct |
17284001 |
T |
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| Q |
245 |
tgaagaagccatggaagaagcacgcgctgcctggatgacattctaacgtcgcgcagaaacaccatcatccttgtcgctgtaatcatgtcgaaccttctcc |
344 |
Q |
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| T |
17284002 |
tggagcagccatggaagaagcacgggctgcctggatgacattctaaggtcgcgcagaaacaccatcatccttgtcgttttaatcatgtcgaaccttctcc |
17284101 |
T |
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| Q |
345 |
cttgcaaccgaaaaccataccttcaaccttgcaccaccaaa |
385 |
Q |
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| T |
17284102 |
cttgcaaccgaaaaccataccttcaaccttgcaccaccaaa |
17284142 |
T |
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