View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_1 (Length: 535)
Name: NF8253_low_1
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Complemental strand, 6878703 - 6878185
Alignment:
| Q |
17 |
gcccgtcatttccttcgtctccctctttcgcccaccgtccccttagcttcgcctttaccttcattcttaatctgcccggtagcatctcgtataaggcctc |
116 |
Q |
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| T |
6878703 |
gcccgtcatttccttcgtctccctctttcgcccaccgtccccttagcttcgcctttaccttcattcttaatcttcccggtagcatctcgtataaggcctc |
6878604 |
T |
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| Q |
117 |
acgtgcgtcctctccaactgtcgcgggcgcatggagacaacgctccgccagtaggatcagattagcataccttaaagcaagcccaactccacccactgtt |
216 |
Q |
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| T |
6878603 |
acgtgcgtcctctccaactgtcgcgggcgcatggagacaacgctccgccagtaggatcaaattagcatacctcaaagcaagcccaactccacccactgtt |
6878504 |
T |
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| Q |
217 |
gatggcggggcgagctttaaaaccttatcatgcttaccattcatcattttctcagttccgtcacgaccagaagcaaaatccattggcataggattgttga |
316 |
Q |
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| T |
6878503 |
gatggcggggcgagctttaaaaccttatcatgcttaccattcatcattttctcagttccgtcacgaccagaagcaaaatccattggcataggattgttga |
6878404 |
T |
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| Q |
317 |
gaaacctgatcacattaggtttcgttgctactttggaaatcggccctgacttcaccacgcgtttctggagtgcttcctcgtaccattctgaaacaccgtg |
416 |
Q |
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| T |
6878403 |
gaaacctgatcacattaggtttcgttgctactttggaaatcggccctgactttaccacgcgcttctggagtgcttcctcgtaccattctgaaacaccgtg |
6878304 |
T |
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| Q |
417 |
atttgaattatgatacaattcacggtgtttcagaaggcaacaatggtcaaacccaaaaccaaagagcatggaattgttgttctcatcctgttcttcatta |
516 |
Q |
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| T |
6878303 |
atttgaattatgatacaattcacggtgttccagaaggcaacaatggtcaaacccaaaaccaaagagcatggaattgttgttctcatcctgttcttcatta |
6878204 |
T |
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| Q |
517 |
atgtatgctccgaaaacgg |
535 |
Q |
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| T |
6878203 |
atgtatgctccgaaaacgg |
6878185 |
T |
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