View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_15 (Length: 352)
Name: NF8253_low_15
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 51073411 - 51073606
Alignment:
| Q |
14 |
ttggcatagattatagtcactgttaaatgaattnnnnnnnnnnnngtgatttttgcactctcccataatatcgtgattcatgcatatatagaatgatttt |
113 |
Q |
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| T |
51073411 |
ttggcatagattatagtcactgttaaatgaattaaaaaaaaaaa-gtgatttttgcactctcccataatatcgtgatccatgcatatatagaatgatttt |
51073509 |
T |
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| Q |
114 |
gtttttggtctgagactatcaatagggaggaacaacccatcttaatttgtgattaatctttgttatgttgggatagacctacttattaaatagatag |
210 |
Q |
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| T |
51073510 |
gcttttggtctgagactatcaatagggaggaacaacccatcttaatttgtgattaatctttgttatgttgggatagacctacttattaaatagatag |
51073606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 51073652 - 51073747
Alignment:
| Q |
238 |
gaataagtgatgatgactttgctcgtatgataagtaccaaaaacatgaagaacaaaaatatgtaaaaacaggttagaaaataataataaatcagaa |
333 |
Q |
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| T |
51073652 |
gaataagtgatgatgactttgctcgtatgataagtaccaaaaacatgaacaacaaaaaaatgtaaaaacaggttagaaaataataataaatcagaa |
51073747 |
T |
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