View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_17 (Length: 341)
Name: NF8253_low_17
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 23337057 - 23336748
Alignment:
| Q |
1 |
gtctaagtcaaaatcaaaattatatacacacggaaaataagtcagtgaaactaattaaacactt-gtcacaccctctatgatattatctatcatatatat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23337057 |
gtctaagtcaaaatcaaaattatatacacacggaaaataagtcagtgaaactaattaa-cactttgtcacaccctctatgatattatctatcatatatat |
23336959 |
T |
|
| Q |
100 |
tatctgaaaaccaaataaaaaagaaaattttccatgtgatcatataagattataaggtcatgaagaaatctgatgggcttgggcttgggcctgatgggct |
199 |
Q |
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| T |
23336958 |
tatctgaaaaccaaataaaaaagaaaattttccatgtgatcatataagattataaggtcatgaagaaatctgatgggcttgggctt-------------- |
23336873 |
T |
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| Q |
200 |
tgggcttgagcattagagaatcttgacttgttggtgtttgtttggttgttgcaagggtttgtagctacacgttcacaagaaggacacatagtgagagtgg |
299 |
Q |
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| T |
23336872 |
-gggcttgagcattagagaatcttgacttgttggtgtttgtttggttgttgcaagggtttgtagctacacgttcacaagaaggacacatagtgagagtgg |
23336774 |
T |
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| Q |
300 |
tagctggaagttgcatgtagaatggt |
325 |
Q |
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|||||||||||||||||||||||||| |
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| T |
23336773 |
tagctggaagttgcatgtagaatggt |
23336748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 37140784 - 37140730
Alignment:
| Q |
271 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggt |
325 |
Q |
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| T |
37140784 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggt |
37140730 |
T |
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