View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_21 (Length: 293)
Name: NF8253_low_21
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 27986603 - 27986852
Alignment:
| Q |
19 |
tattactcctttaattgnnnnnnnaattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttctt |
118 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27986603 |
tattactcctttaattgtttttttaattgcatctgacatattcgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttctt |
27986702 |
T |
|
| Q |
119 |
ttgtgaaaaaagatttcaagttaacgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatctt |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
27986703 |
ttgtgaaaaaagattccaagttaacgtccttggaattcttaagaaccataaaacagatatggaaactgtttccgacaaattctgtttggaagatgatctt |
27986802 |
T |
|
| Q |
219 |
gagtttgattatcttctgctgccatctattgctatagaggaaacaccata |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27986803 |
gagtttgattatcttctgctgccatctattgctatagaggaaacaccata |
27986852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 43 - 267
Target Start/End: Original strand, 26459351 - 26459573
Alignment:
| Q |
43 |
aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa |
142 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||| |
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| T |
26459351 |
aattgcatct-acatattcacaagtgttgagaaaaagtcaaaacaattatggtttgttttcattttccaggttcttttgtgtaaaa-gattccaagttaa |
26459448 |
T |
|
| Q |
143 |
cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca |
242 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26459449 |
tgtccttggaattcttatgaaccataaaacagatatggaaactgtttccgacaagttctgtttggaagatgatcttgagtttgattatcttctgctgcca |
26459548 |
T |
|
| Q |
243 |
tctattgctatagaggaaacaccat |
267 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26459549 |
tctattgctatagaggaaacaccat |
26459573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 27998034 - 27997811
Alignment:
| Q |
43 |
aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa |
142 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||| |||||||| |
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| T |
27998034 |
aattgcatctcacatattcgcaagcgttgagaaaaagtcaaaacaattatggtctgttttcattttccaagttcttttgtgcaaaa-gattccaagttaa |
27997936 |
T |
|
| Q |
143 |
cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27997935 |
tgtccttggaattcttatgaaccataaaacagatatggaaactgtttccgacaaattctgtttggaagatgatcttgagtttgattatcttctgttgcca |
27997836 |
T |
|
| Q |
243 |
tctattgctatagaggaaacaccat |
267 |
Q |
| |
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||||||| | ||||||||||||||| |
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| T |
27997835 |
tctattgttgtagaggaaacaccat |
27997811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 267
Target Start/End: Original strand, 27996065 - 27996288
Alignment:
| Q |
43 |
aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa |
142 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||| |||||||| |
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| T |
27996065 |
aattgcatctaacatattcgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcatttctcaggttcttttgtgcaaaa-gattccaagttaa |
27996163 |
T |
|
| Q |
143 |
cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27996164 |
tgtccttggaattcttatgaaccataaaacagatatgtaaactgtttccgacaaattctgtttggaagatgatcttgagtttgattatcttctgctgcca |
27996263 |
T |
|
| Q |
243 |
tctattgctatagaggaaacaccat |
267 |
Q |
| |
|
| |||||||||||| |||||||||| |
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|
| T |
27996264 |
tttattgctatagaagaaacaccat |
27996288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 267
Target Start/End: Complemental strand, 27988641 - 27988419
Alignment:
| Q |
44 |
attgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaac |
143 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
27988641 |
attgcatctgacatattcaaaagagttgagaaaaagtcaaaacaattatcgtttgttttcattttccacgttcttttgtgcaaaa-gattccaagttaat |
27988543 |
T |
|
| Q |
144 |
gtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgccat |
243 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||| |||||| ||||| || || ||| |
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| T |
27988542 |
gtccttggaattcttttgaaccataaaacagatatggaaactgtttccgacaaattctgttcggaagatgatcttgaatttgatcatcttttgttgtcat |
27988443 |
T |
|
| Q |
244 |
ctattgctatagaggaaacaccat |
267 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
27988442 |
ctattgctatagaggaaacaccat |
27988419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 264
Target Start/End: Original strand, 29678142 - 29678353
Alignment:
| Q |
50 |
tctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaacgtcctt |
149 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| |||| |||| |||||||| |||||| |
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| T |
29678142 |
tctgacatattcgcaagtgttgggaaaa-gtcaatacaattatggtttgttt-cattttccaggttcttttgtgtaaaa-gattccaagttaatgtcctt |
29678238 |
T |
|
| Q |
150 |
ggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgccatctattg |
249 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
29678239 |
ggaattcttatgaaccataaaacggacaaggaaactgattccggcaaattctgtttggaagatgatcttgagattgattatcttctgctgccatctattg |
29678338 |
T |
|
| Q |
250 |
ctatagaggaaacac |
264 |
Q |
| |
|
||||||||||||||| |
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|
| T |
29678339 |
ctatagaggaaacac |
29678353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 11491286 - 11491065
Alignment:
| Q |
43 |
aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa |
142 |
Q |
| |
|
||||| ||| |||||||||||||| |||| ||||| ||||| ||||||||| ||||||||| ||||||| ||||||||||| |||| |||| ||||||| |
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| T |
11491286 |
aattgtatcagacatatttgcaagtgttgggaaaa-gtcaatacaattatgatttgttttc-ttttccaggttcttttgtgtaaaa-gattccaagttag |
11491190 |
T |
|
| Q |
143 |
cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca |
242 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||| |||| | | || |||| | | ||||||||||||||||| | |||||||||||||||||| |
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|
| T |
11491189 |
tatccttggaattcttatgaattctaaaatggataaagaaagtttttctgaaaaatactctctggaagatgatcttgagatagattatcttctgctgcca |
11491090 |
T |
|
| Q |
243 |
tctattgctatagaggaaacaccat |
267 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11491089 |
tctattgctatagaggaaacaccat |
11491065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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