View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_24 (Length: 274)
Name: NF8253_low_24
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 10495098 - 10494844
Alignment:
| Q |
5 |
aagaaacaaagaaaattgacaagttctataagtcttatcataaaaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacgcaatgttcg |
104 |
Q |
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| T |
10495098 |
aagaaacaaagaaaattgaaaagttctataagtcttatcataaaaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacaccatgttcg |
10494999 |
T |
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| Q |
105 |
aatgaactggatgtctaatcccatttcccattctatccctgcagatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494998 |
aatgaactggatgtctaatcccatttcccattctatccctgcagatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttc |
10494899 |
T |
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| Q |
205 |
ctttcctgcattaattcacattttctctgcttctataactttctcacactgtttc |
259 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494898 |
ttttcctgcattagttcacattttctctgcttctataactttctcacactgtttc |
10494844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 7476237 - 7476285
Alignment:
| Q |
182 |
tactaatttaatcatacactttcctttcctgcattaattcacattttct |
230 |
Q |
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| T |
7476237 |
tactaatttaatcttagagtttccttttctgcattatttcacattttct |
7476285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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