View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_3 (Length: 497)
Name: NF8253_low_3
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 45745431 - 45745237
Alignment:
| Q |
14 |
cccggttcgtcaagtgagaatccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttct |
113 |
Q |
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| T |
45745431 |
cccggttcgtcaagtgagaatccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttct |
45745332 |
T |
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| Q |
114 |
aatgcacaaccattcataagctgtagaagacttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaagtgctaatccaag |
208 |
Q |
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| T |
45745331 |
aatgcacaaccattcataagctgcagaagacttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaagtgctaatccaag |
45745237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 270 - 483
Target Start/End: Complemental strand, 45745174 - 45744961
Alignment:
| Q |
270 |
atagtgactgctctatctaaatagaataaggttgacatttgcccgagaaatcagttttttggtagnnnnnnnacttgtttagttgggaagatgcttattg |
369 |
Q |
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| T |
45745174 |
atagtgactgctctatctaaatagaataaggttgaaatttgcccgagaaatcagttttttggtagtttttttacttgtttagttgggaagatgcttattg |
45745075 |
T |
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| Q |
370 |
tctgtacttagattgtccacttctagtactcctagagattagtgaatcaaggcttatattgtttagctttgaaacttcatatatctgtttggcatctttt |
469 |
Q |
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| T |
45745074 |
tctgtacttagattgtccacttctagtactcctagagattagtgaatcaaggcttatattgtttagctttgaaacttcatatatctgtttggcatctttt |
45744975 |
T |
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| Q |
470 |
agtatttaaaactg |
483 |
Q |
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| T |
45744974 |
agtatttaaaactg |
45744961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 12325558 - 12325507
Alignment:
| Q |
144 |
cttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
195 |
Q |
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| T |
12325558 |
cttccctctggttgtgttgtgcaagatatgccaaatggttactccaaggtaa |
12325507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12325668 - 12325620
Alignment:
| Q |
34 |
tccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttga |
82 |
Q |
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| T |
12325668 |
tccttaggttttgcaagcagcatgcagaaggtgtttgggctgtggttga |
12325620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 28597423 - 28597362
Alignment:
| Q |
134 |
ctgtagaagacttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
195 |
Q |
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| T |
28597423 |
ctgtaggaggcttccttctggttgtgtggttcaagatatgccaaatggttactctaaggtaa |
28597362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 28597512 - 28597475
Alignment:
| Q |
48 |
aagcagcatgcagaaggtgtatgggcagtggttgatgt |
85 |
Q |
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| T |
28597512 |
aagcaacatgcagaaggggtatgggcagtggttgatgt |
28597475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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