View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_31 (Length: 244)
Name: NF8253_low_31
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 11602369 - 11602158
Alignment:
| Q |
15 |
acagaaattacctcaatcccctaaaccttttgtttccatgaccttgattctgttgagacaatcaaatcattataatttcctttatcttttacaagactat |
114 |
Q |
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| T |
11602369 |
acagaaattacctcaatcccctaaaccttttgtttccatgaccttgattctgttgagacaatcaaatcattattatttcctttatcttttacaagactat |
11602270 |
T |
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| Q |
115 |
agacattgtactggtaaaaacaaagtaaaactgtatgtagcatacattacaaccaagttatagtattatttggtgatacatttacaagcattgcgtgcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11602269 |
agacattgtactggtaaaaacaaagtaaaactgtatgtagcatacattacaaccaagttatagtattatttggtgagacatttacaagcattgcgtgcct |
11602170 |
T |
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| Q |
215 |
agttctcggatc |
226 |
Q |
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|||||||||||| |
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| T |
11602169 |
agttctcggatc |
11602158 |
T |
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