View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8253_low_33 (Length: 239)
Name: NF8253_low_33
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 37625189 - 37625098
Alignment:
| Q |
36 |
tccagaagtgcaatcttaataaagcattttgccaatttctaatataa-tttagtcctacacttctcaacaaaatactagtaatcgttcctac |
126 |
Q |
| |
|
||||||| |||||||||| ||| || ||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37625189 |
tccagaattgcaatcttataaaaccactttgcgaatttctaataaaaatttagtcgtacacttctcaacaaaatactagtaatcgttcctac |
37625098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 37801727 - 37801636
Alignment:
| Q |
36 |
tccagaagtgcaatcttaataaagcattttgccaatttctaatataa-tttagtcctacacttctcaacaaaatactagtaatcgttcctac |
126 |
Q |
| |
|
||||||| |||||||||| ||| || ||||| ||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37801727 |
tccagaattgcaatcttataaaaccactttgcgaatttctaataaaaatttagacgtacacttctcaacaaaatactagtaatcgttcctac |
37801636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 29655678 - 29655634
Alignment:
| Q |
176 |
attaccaacacagttaactttaggactgaaatcctctgtggcaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29655678 |
attaccaacacagttaactttaggactgaaatcctccgtggcaat |
29655634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 29655786 - 29655723
Alignment:
| Q |
63 |
tttgccaatttctaatataatttagtcctacacttctcaacaaaatactagtaatcgttcctac |
126 |
Q |
| |
|
||||||||||||||| | ||| ||||| | |||||||| |||||||| |||||||| ||||||| |
|
|
| T |
29655786 |
tttgccaatttctaaaaaaatatagtcatgcacttctcgacaaaatattagtaatcattcctac |
29655723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 20728457 - 20728413
Alignment:
| Q |
176 |
attaccaacacagttaactttaggactgaaatcctctgtggcaat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20728457 |
attaccaacacagttaactttaggactgaaatcctctgtggcaat |
20728413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University