View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_34 (Length: 224)
Name: NF8253_low_34
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 51902814 - 51903022
Alignment:
| Q |
1 |
aataagagatgaatgattaaatgattatttaattacttgtatgatgttttgctgacacattttttcgacatcaacagcatatgtatctattgatattgaa |
100 |
Q |
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| T |
51902814 |
aataagagatgaatgattaaataattgtttggttaattatatgatgttttgttgacacattttttcgacatcaacagcgtatgtatctattgatgttgaa |
51902913 |
T |
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| Q |
101 |
aa-aatgagaataacataattcaatgtttcaagaatatgaaaaaattgtagaaaacagttatgatgtttttctatgcattcaaaaatgaaatgttatatc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51902914 |
aaaaatgagaataacataattcaatgtttcaagaatatgaaaaaattgtagaaaacagttatgatgtttttctatgcattcaaaaatgaaatgttatatc |
51903013 |
T |
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| Q |
200 |
catctatat |
208 |
Q |
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||||||||| |
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| T |
51903014 |
catctatat |
51903022 |
T |
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