View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8253_low_35 (Length: 223)

Name: NF8253_low_35
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8253_low_35
NF8253_low_35
[»] chr4 (3 HSPs)
chr4 (1-223)||(2878955-2879177)
chr4 (42-215)||(2895769-2895942)
chr4 (52-219)||(2888427-2888594)
[»] chr2 (4 HSPs)
chr2 (56-128)||(44232518-44232590)
chr2 (56-197)||(44209486-44209627)
chr2 (56-197)||(44221700-44221841)
chr2 (58-131)||(43455629-43455702)
[»] chr8 (1 HSPs)
chr8 (87-151)||(4502991-4503055)
[»] chr7 (6 HSPs)
chr7 (85-133)||(39536651-39536699)
chr7 (85-143)||(39545968-39546026)
chr7 (85-134)||(1083275-1083324)
chr7 (85-134)||(39340177-39340226)
chr7 (84-132)||(39354999-39355047)
chr7 (85-152)||(39562774-39562841)
[»] chr1 (2 HSPs)
chr1 (57-209)||(2147362-2147514)
chr1 (56-155)||(2159232-2159331)
[»] chr3 (1 HSPs)
chr3 (57-203)||(49774608-49774754)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2879177 - 2878955
Alignment:
Q  1 tgtaaataaagcatagtgcaaatacatttatcttgtgtgtgaaatagtgattttattacctgtgcaagtgcatagggtaaggcagaatacattccagcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879177 tgtaaataaagcatagtgcaaatacatttatcttgtgtgtgaaatagtgattttattacctgtgcaagtgcatagggtaaggcagaatacattccagcag 2879078  T
Q  101 ctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccccaatgaagaaaacagcagtgtacattgagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879077 ctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccccaatgaagaaaacagcagtgtacattgagcc 2878978  T
Q  201 catggcattagacaggtctagtc 223  Q
    |||||||||||||||||||||||    
T  2878977 catggcattagacaggtctagtc 2878955  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 2895769 - 2895942
Alignment:
Q  42 aaatagtgattttattacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactact 141  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||     
T  2895769 aaatggtgattttattacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccacg 2895868  T
Q  142 ggttgtactgaggctgaattttggaccccaatgaagaaaacagcagtgtacattgagcccatggcattagacag 215  Q
    |||||||| || | |||||| |||||||||| ||||| ||||||||| ||||| || || | ||||||| ||||    
T  2895869 ggttgtacagacgatgaattctggaccccaaggaagagaacagcagtatacatcgaaccgagggcattaaacag 2895942  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 2888594 - 2888427
Alignment:
Q  52 tttattacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactg 151  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| |    
T  2888594 tttattacctgtgcaaatgcataaggtaaggcagaatacatcccagcagctctttctctatagaacacagatctttcaactgctaccactggttgtacag 2888495  T
Q  152 aggctgaattttggaccccaatgaagaaaacagcagtgtacattgagcccatggcattagacaggtct 219  Q
      | |||||| |||||||||| ||||| ||||||||| ||||| || || | ||||||| ||||||||    
T  2888494 ctgatgaattctggaccccaaggaagagaacagcagtatacatcgaaccgagggcattaaacaggtct 2888427  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 44232518 - 44232590
Alignment:
Q  56 ttacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttc 128  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  44232518 ttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctataaaatacagttctttc 44232590  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 44209486 - 44209627
Alignment:
Q  56 ttacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggc 155  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||| || || || || || || || || |     
T  44209486 ttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctattaaatacagttctttccactgcaaccaccggctgcacagaaga 44209585  T
Q  156 tgaattttggaccccaatgaagaaaacagcagtgtacattga 197  Q
     |||||||| || |||| ||||| |||||| || ||||||||    
T  44209586 agaattttgcactccaaggaagagaacagcggtatacattga 44209627  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 44221700 - 44221841
Alignment:
Q  56 ttacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggc 155  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||  |||||| |||||| ||||| |||||||| || || || || || || || |     
T  44221700 ttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttcaactgcaaccaccggctgcacagaaga 44221799  T
Q  156 tgaattttggaccccaatgaagaaaacagcagtgtacattga 197  Q
     |||||||| || |||| ||||| |||||| || ||||||||    
T  44221800 agaattttgtactccaaggaagagaacagcggtatacattga 44221841  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 43455629 - 43455702
Alignment:
Q  58 acctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaac 131  Q
    ||||| ||||| || || ||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  43455629 acctgagcaagggcgtaaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 43455702  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 4503055 - 4502991
Alignment:
Q  87 atacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactg 151  Q
    ||||||||||||||||||||||||||| || || ||||||||||  ||||| |||||||| ||||    
T  4503055 atacattccagcagctctttctctatagaacactgttctttcaatggctacaactggttgaactg 4502991  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 39536651 - 39536699
Alignment:
Q  85 gaatacattccagcagctctttctctataaaaaacagttctttcaacag 133  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  39536651 gaatacattccagccgctctttctctataaaagactgttctttcaacag 39536699  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 39545968 - 39546026
Alignment:
Q  85 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactgg 143  Q
    ||||||||||| || |||||||||| |||||| || ||||||||||||||||| |||||    
T  39545968 gaatacattccggctgctctttctcgataaaagaccgttctttcaacagctaccactgg 39546026  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 1083275 - 1083324
Alignment:
Q  85 gaatacattccagcagctctttctctataaaaaacagttctttcaacagc 134  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  1083275 gaatacattccggctgctctttctctataaaagacggttctttcaacagc 1083324  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 39340226 - 39340177
Alignment:
Q  85 gaatacattccagcagctctttctctataaaaaacagttctttcaacagc 134  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  39340226 gaatacattccggccgctctttctctataaaagaccgttctttcaacagc 39340177  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 39355047 - 39354999
Alignment:
Q  84 agaatacattccagcagctctttctctataaaaaacagttctttcaaca 132  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||||    
T  39355047 agaatacattccggctgctctttctctataaaagaccgttctttcaaca 39354999  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 39562774 - 39562841
Alignment:
Q  85 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactga 152  Q
    ||||||||||| || ||||||||||||||||| || |||||||| ||||| || ||||| || |||||    
T  39562774 gaatacattccggctgctctttctctataaaagaccgttctttcgacagcaaccactggctgcactga 39562841  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 2147362 - 2147514
Alignment:
Q  57 tacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggct 156  Q
    |||||||||||| ||||| || |  || ||||||||||| |||||||||||||| || || || ||||| ||||  ||||||| ||||||||| |||||     
T  2147362 tacctgtgcaagagcatatggcatagctgaatacattcctgcagctctttctctgtagaagactgttctctcaattgctactattggttgtaccgaggca 2147461  T
Q  157 gaattttggaccccaatgaagaaaacagcagtgtacattgagcccatggcatt 209  Q
      ||||   ||||| ||||||  ||||||||  |||||||| ||||| |||||    
T  2147462 ccatttacaacccctatgaaggtaacagcagcatacattgaccccattgcatt 2147514  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 2159232 - 2159331
Alignment:
Q  56 ttacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggc 155  Q
    ||||||||||   |||||| || || || |||||||||||||||||||||||||| || || || ||||| ||||| |||| ||| || || ||||||||    
T  2159232 ttacctgtgctgctgcataaggcaaagcggaatacattccagcagctctttctctgtagaagactgttctctcaactgctattacaggctgcactgaggc 2159331  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 49774754 - 49774608
Alignment:
Q  57 tacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggct 156  Q
    ||||||| ||| |||||| || || || || ||||||||||||||  |||||||||| ||||| ||||| ||||  ||||| |||||||| || || |      
T  49774754 tacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctctatagaaaactgttctctcaatggctacaactggttgcaccgatgta 49774655  T
Q  157 gaattttggaccccaatgaagaaaacagcagtgtacattgagcccat 203  Q
    | |||||| |||||||||||||  || |||| |||||| || |||||    
T  49774654 gcattttgtaccccaatgaagagcactgcagcgtacatggaccccat 49774608  T

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