View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_4 (Length: 495)
Name: NF8253_low_4
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 170 - 477
Target Start/End: Complemental strand, 51318791 - 51318484
Alignment:
| Q |
170 |
gttgcaatatgcttacagatagaaaaggtgataaaaagtagtatctgtggaaatgaatcaaacaccagggttggcactgcaaagcataccctgagacaaa |
269 |
Q |
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| T |
51318791 |
gttgcaatatgcttacagatagaaaaggtgataaaaagtagtatctgtggaaatgaatcaaacaccagggttggcactgcaaagcataccctgagacaaa |
51318692 |
T |
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| Q |
270 |
gatctcgaacttgttgaatcgattccgaggcaagaagtgagacgcgcagatgaaaccgccgagtgcaagggaaggagtgactgtacgcaacctagctccg |
369 |
Q |
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| T |
51318691 |
gatctcgaacttgttgaatcgattccgaggcaagaagtgagccgcgcagatgaaaccgccgagtgcaagggaaggagtgactgtacgcaacctagctccg |
51318592 |
T |
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| Q |
370 |
ggaaggacctgaacggaggagaagagaagagtgagaattaaagttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtg |
469 |
Q |
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| T |
51318591 |
cgacggacctgaacggaggagaagagaagagtgagaattaacgttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtg |
51318492 |
T |
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| Q |
470 |
cgagtttt |
477 |
Q |
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| T |
51318491 |
cgagtttt |
51318484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 51318960 - 51318843
Alignment:
| Q |
1 |
tgaaaaattgatccctattatgattaccctattaatcaccaataaacaacactcagctccgtgataacttcaatgtagatttaattaacctaatcgcaga |
100 |
Q |
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| T |
51318960 |
tgaaaaattgatccctattttgattaccctattaatcaccaataaacaacactcagctccgtgataacttcaatgtagatttaattaacctaatcgcaga |
51318861 |
T |
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| Q |
101 |
aatatagctaagactacc |
118 |
Q |
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| T |
51318860 |
aatatagctaagactacc |
51318843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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