View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_5 (Length: 478)
Name: NF8253_low_5
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 36056306 - 36055857
Alignment:
| Q |
18 |
catagatcaacaaagaaaattcaaccctatctttatctttcagtactaaattatcttctaaccataatctactatccaaaccactcctagtcctaaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36056306 |
catagatcaacaaagaaaattcaaccctatctttatctttcactaccaaattctcctctaaccacaatctactatccaaaccactcctagtcctaaacat |
36056207 |
T |
|
| Q |
118 |
aaacactgcaaacccagaaacaggtttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattaccccta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056206 |
aaacactgcaaacccagaaacaggtttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattaccccta |
36056107 |
T |
|
| Q |
218 |
aaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattcagaacaggtgatttaaacccttcattttcaccactgcatttaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056106 |
aaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattcagaacaggtgatttaaacccttcattttcaccactgcatttaa |
36056007 |
T |
|
| Q |
318 |
tcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaagtgtgttacctgaaaaatattcacttcttgaaaaaagtgaaac |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056006 |
tcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaagtgtgttacctgaaaaatattcacttcttgaaaaaagtgaaac |
36055907 |
T |
|
| Q |
418 |
tttatccataagggtccnnnnnnnaaacttctttggtaaattttcttcat |
467 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
36055906 |
tttatccataagggtcctttttttaagcttctttggtaaattttcttcat |
36055857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 20085279 - 20085528
Alignment:
| Q |
18 |
catagatcaacaaagaaaattcaaccctatctttatctttcagtactaaattatcttctaaccataatctactatccaaaccactcctagtcctaaacat |
117 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||| | || ||||||||||| |||||||||||||||||||| || || |||||||| |
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| T |
20085279 |
catagatcaacaaagagaattcaactctgtctttatctttctgagaatgcttctcttctaaccacaatctactatccaaaccacttcttgttctaaacat |
20085378 |
T |
|
| Q |
118 |
aaacactgcaaacccagaaac---aggtttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattaccc |
214 |
Q |
| |
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|| || ||| | |||||| | ||| ||||| |||||| ||||||||||||||||||||| ||||| || |||||||||||||| |||||||| || |
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| T |
20085379 |
gaaaacagcataaccagaagcttgaggattaaagaaccaatcatgaacatcccaaagcaaatcaaccaataaaccatcaacaaaaatggtttgattccct |
20085478 |
T |
|
| Q |
215 |
ctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaat |
264 |
Q |
| |
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||||||||||| | ||| |||||||||| ||| ||| ||||||||||||| |
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|
| T |
20085479 |
ctaaaattccattgcaatctcttcacacgaatcacattcttcttatcaat |
20085528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 261
Target Start/End: Complemental strand, 42021707 - 42021508
Alignment:
| Q |
71 |
tcttctaaccataatctactatccaaaccactcctagtcctaaacataaacactgcaaacccagaaac---------aggtttaaaaaaccaactatgaa |
161 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||||||||||||| || ||| | ||||| | ||| || |||| |||| ||| | |
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| T |
42021707 |
tcttccaaccataatctactattcaaaccactccttgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgca |
42021608 |
T |
|
| Q |
162 |
catcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatc |
261 |
Q |
| |
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|||||| | || |||||| | ||| ||||| ||||||||||||||||| || | ||||||||||||||| |||||||| || |||||||||||||| |
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| T |
42021607 |
aatcccacatcatatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
42021508 |
T |
|
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