View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_low_7 (Length: 437)
Name: NF8253_low_7
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 5231277 - 5230850
Alignment:
| Q |
1 |
aaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
5231277 |
aaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatgaa |
5231178 |
T |
|
| Q |
101 |
acaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5231177 |
acaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagtt |
5231078 |
T |
|
| Q |
201 |
cctccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatcagatcttagaagtattcacacaggat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5231077 |
cctccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatgagatcttagaagtattcacacaggat |
5230978 |
T |
|
| Q |
301 |
taatcaaatgtaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtctt |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230977 |
taatcaaatttaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtctt |
5230878 |
T |
|
| Q |
401 |
cagttggtctatgagatatagcaccacc |
428 |
Q |
| |
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| T |
5230877 |
cagttggtctatgagatatagcaccacc |
5230850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
122 |
accatattcatcaataggagcatcataatcatagcttgt |
160 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||| |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
118 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
213 |
Q |
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|||||||||||||||| ||||||||||||||||| || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
121 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
213 |
Q |
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|
||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 17126529 - 17126449
Alignment:
| Q |
332 |
ataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctat |
412 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||| |||| |||||| ||||| ||| ||||||||||||| | |||||||| |
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| T |
17126529 |
ataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtctat |
17126449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
119 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
213 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
121 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
214 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
117 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
214 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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