View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_1 (Length: 814)
Name: NF8254_low_1
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 14 - 599
Target Start/End: Original strand, 50549738 - 50550324
Alignment:
| Q |
14 |
attattctttaaaaccattacttgttccttcataacctttttcccactatttggtttatt---gttgtcgtcagtcatagaaggagaaacttcattgagg |
110 |
Q |
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| T |
50549738 |
attattctttaaaaccattacttgttccttcataacctttttcccactatttggtttattattgttgtcgtcagtcatagaaggagaaacttcattgagg |
50549837 |
T |
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| Q |
111 |
ttctttatggggtcttcacgtatctttcttttcnnnnnnn----ccttatcccatggtatatg----cttcccacttgaactatttgaccctacatgaaa |
202 |
Q |
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| T |
50549838 |
ttctttatggggtcttcacgtatctttcttttcttttcttttttccttatcccatggtatatgtatgcttcccacttgaaatatttcaccctacatgaaa |
50549937 |
T |
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| Q |
203 |
ggttaattggtcctt-------------gatagaggagagaatttattatacccctttattataggaatattttttccatgattagcattaaattgtttc |
289 |
Q |
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| T |
50549938 |
ggtcaattggtccttatcttcgttgattgatagaggagagaatttattata-------------ggaatattttttccatgattagcattaaattgtttc |
50550024 |
T |
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| Q |
290 |
ctattgtttctcgtcctatcactaactaccaaccaatcaccatgcgtttcttcaccagattgtaggtcctgtgagatattttccaaggatttaggaagat |
389 |
Q |
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| T |
50550025 |
----------tcctcctatcactaactaccaaccaatcaccatgcgtttcttcaccagattgtaggtcatgtgagatattttccaaggatttaggaagat |
50550114 |
T |
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| Q |
390 |
tagttgactcattgacaaccgtttcattactgtgatcttgttgtaccatagcgcttgcagctgtattttgggtgacctgaacactgtcaacaatcggagt |
489 |
Q |
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| T |
50550115 |
tagttgactcattgacaaccgtttcattactgtgatcttattgtaccatagcgcttgcagctgtattttgggtgacctgaacactgtcaacaatcggagt |
50550214 |
T |
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| Q |
490 |
gctgacaattgttttcatagccgccgttgtggtgaaattaggagtaacatgtccataacacccacaaccactacaaatcagatgctatccctcataagcc |
589 |
Q |
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| T |
50550215 |
gccgacaattgttttcatagccgccgttgtggtgaaattatgagtaacatgtccataacacccacaaccactacaaatcagatgtaatccctcataagcc |
50550314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 690 - 796
Target Start/End: Original strand, 50550327 - 50550433
Alignment:
| Q |
690 |
gtgtgcgttgatctactttgattggggtgccaatggcagaagctagcaccagaagaacgctttcatcatagtaaatcaagctcatccctgggaaacgaac |
789 |
Q |
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| T |
50550327 |
gtgtgcgttgatctactttgattggggtgccaatggcagaagctagcaccagaagaacgctttcatcatagtaaatcaagctcatgcctgggaaacgaac |
50550426 |
T |
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| Q |
790 |
ccaaacc |
796 |
Q |
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| T |
50550427 |
ccaaacc |
50550433 |
T |
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