View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_2 (Length: 706)
Name: NF8254_low_2
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 356 - 687
Target Start/End: Original strand, 29600088 - 29600419
Alignment:
| Q |
356 |
atttaatttaatctttcctttttcttatcttttcaatgtccgctttagattatctctcaccttcaacacacgctacaatctttcttcactctcatcactt |
455 |
Q |
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| T |
29600088 |
atttaatttaatctttcctttttcttatcttttcaatgtccgctttagattatctctcaccttcaacacacgctacaatctttcttcactctcatcactt |
29600187 |
T |
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| Q |
456 |
tcgaaacgcacgtcgtttcgttattcccaattcaccttcaattagggttttaagagattcaatttttctcaacaatttcggaaaattcgaattatggaaa |
555 |
Q |
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| T |
29600188 |
tcgaaacgcacgtcgtttcgttattcccaattcaccttcaattagggttttaagagattcaatttttctcaacaatttcggaaaattcgaattatggaaa |
29600287 |
T |
|
| Q |
556 |
ggattaaacactaaattgagcaatttcgatggacttagaactgctgctagcagtggtggtcaggagagtgattctggggagaagagtgaagaggggaaag |
655 |
Q |
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| T |
29600288 |
ggattaaacactaaattgagcaatttcgatggacttagaactgctgctagcagtggtggtcaggagagtgattctggggagaagagtgaagaggggaaag |
29600387 |
T |
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| Q |
656 |
gggttgaagttgaaccgggttcaggtggttcg |
687 |
Q |
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| T |
29600388 |
gggttgaagttgaaccgggttcaggtggttcg |
29600419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 29599743 - 29599987
Alignment:
| Q |
30 |
atatttgtacatcatacaagtatgtggaaagatttgtcaaaaaattatcataatatagttgtaccaatattatttatgtttattcaaacaccaaacnnnn |
129 |
Q |
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| T |
29599743 |
atatttgtacaaaatatgagtatgtgaaaaaatttgttaaaaagttataataatataattgtaccaatattatttctgtttattcaaacaccaaacaaaa |
29599842 |
T |
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| Q |
130 |
nnnncacaa-ttaaactaaagtaaccaacggtcaagatctcaacacacctttccaatccaacgagtcacatttcatataatatcaccttgtccctttctc |
228 |
Q |
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| T |
29599843 |
aaaacacaaattaaactaaagtaaccaacggtcaagatctcaacacacctttccaatccaacgagtcacatttcatataatatcaccttgtccctttctc |
29599942 |
T |
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| Q |
229 |
tctcatcccaccattaacacttcaccatataaacaacaacaacaa |
273 |
Q |
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| T |
29599943 |
tctcatcccaccattaacacttcaccatataaacaacaacaacaa |
29599987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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