View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_3 (Length: 607)
Name: NF8254_low_3
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 35834 - 35380
Alignment:
| Q |
1 |
acgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagtgataaaaggtt |
100 |
Q |
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| T |
35834 |
acgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagtgataaaaggtt |
35735 |
T |
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| Q |
101 |
ataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaatgaaagtagttg |
200 |
Q |
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| T |
35734 |
ataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaatgaaagtagttg |
35635 |
T |
|
| Q |
201 |
atgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccata |
300 |
Q |
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| T |
35634 |
atgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccata |
35535 |
T |
|
| Q |
301 |
gagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaaatggc |
400 |
Q |
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| T |
35534 |
gagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaaatggc |
35435 |
T |
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| Q |
401 |
agccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
455 |
Q |
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| T |
35434 |
agccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 471 - 585
Target Start/End: Complemental strand, 35356 - 35242
Alignment:
| Q |
471 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaa |
570 |
Q |
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| T |
35356 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttagcgatgataattccaa |
35257 |
T |
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| Q |
571 |
cggagctgacaatgt |
585 |
Q |
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| T |
35256 |
cggagctgacaatgt |
35242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 395
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
227 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
326 |
Q |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
|
| Q |
327 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
395 |
Q |
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| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 574
Target Start/End: Original strand, 8677443 - 8677504
Alignment:
| Q |
513 |
aaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaacgga |
574 |
Q |
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||||||||| ||||||||||||||||||| || ||||| || || ||||||||||||||||| |
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| T |
8677443 |
aaagtgaaagcatagccattgttggacataagctgtttattagccatgataattccaacgga |
8677504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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