View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8254_low_4 (Length: 596)

Name: NF8254_low_4
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8254_low_4
NF8254_low_4
[»] chr5 (2 HSPs)
chr5 (17-560)||(15573325-15573847)
chr5 (491-567)||(38803691-38803767)
[»] chr2 (4 HSPs)
chr2 (491-585)||(42161165-42161259)
chr2 (491-584)||(16712210-16712303)
chr2 (491-572)||(981285-981366)
chr2 (493-582)||(24191030-24191119)
[»] chr8 (2 HSPs)
chr8 (491-584)||(20670189-20670282)
chr8 (491-568)||(40536479-40536556)
[»] chr1 (3 HSPs)
chr1 (490-572)||(12673378-12673460)
chr1 (495-585)||(41949563-41949653)
chr1 (491-568)||(43326572-43326650)
[»] chr3 (3 HSPs)
chr3 (491-582)||(46911573-46911664)
chr3 (499-582)||(32993245-32993328)
chr3 (519-582)||(39354716-39354779)
[»] chr4 (1 HSPs)
chr4 (497-563)||(15828539-15828605)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 560
Target Start/End: Complemental strand, 15573847 - 15573325
Alignment:
Q  17 taaccaatgagtacctatcaaaaataaagaaaaggtaattccactgatctcttaaattgaatatttgttcaatcaattcaatgttagggtacaattttgt 116  Q
    |||||||||||||||||||||||||||| ||||| |||  | |||||| ||| ||||||||| |  | ||||| ||||| ||||||||| ||||||  ||    
T  15573847 taaccaatgagtacctatcaaaaataaataaaagctaa--caactgatatctaaaattgaatgt--ggtcaattaattcgatgttagggcacaatt--gt 15573754  T
Q  117 gtatctaaacctcttgtttctaaccattagaattagcttacattatggtga----taaaggtaactaatgatgttgcacatcaaattaatttggataagt 212  Q
    ||||||||| |||||||| | |||||||||||| || ||||||| |||||     |||||||| ||||||||||||||||||||||||||||||||||||    
T  15573753 gtatctaaatctcttgttgcaaaccattagaatcag-ttacattctggtgtaatttaaaggtatctaatgatgttgcacatcaaattaatttggataagt 15573655  T
Q  213 ataccaaactttcaaatgtctcaagcattacaactttggaaagtacgtaactaccattaaattgtttttctgaacatgaaaaatcatcattatatatcaa 312  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15573654 ataccaaactttcaaatgtctcaagcattcctactttggaaagtacgtaactaccattaaattgtttttctgaacatgaaaaatcatcattatatatcaa 15573555  T
Q  313 actttaatttaatctctgattgaattttcactaactgcatcaatatactcacgtctaatttgggggtgacatctcctgtttttatcaagtataaccatgc 412  Q
    ||||||||||| ||||| |||||||||||||||||| |           || ||||||||||||||||||||||||||||||||||||       |||||    
T  15573554 actttaatttagtctcttattgaattttcactaactac-----------caagtctaatttgggggtgacatctcctgtttttatcaa-------catgc 15573473  T
Q  413 agatgattagcaagtcttttatagaacatctaattatggagtttgtgatgctctacatgttgagacgggtccttatctagggtttatctcacgtgattgt 512  Q
    |||| ||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||| ||||||||||  |||| | || |||||||||||| |||||    
T  15573472 agataattagcaagtcttttatagaaaatctagttacggagcttgtgatgctctacatgctgagacgggtttttatttgggatttatctcacgtaattgt 15573373  T
Q  513 tgagagtgacttgaaagtgcctattaatatggttactaacaattgtaa 560  Q
    ||||||||||| |||||||| | || |||| |||| ||||||||||||    
T  15573372 tgagagtgactcgaaagtgcttcttgatattgttattaacaattgtaa 15573325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 567
Target Start/End: Original strand, 38803691 - 38803767
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaat 567  Q
    ||||||||| |||| ||||||||||||||||||  ||||| | |||| ||| |||||||||||||||||||||||||    
T  38803691 agggtttatttcacttgattgttgagagtgactcaaaagttcttatttataaggttactaacaattgtaagatcaat 38803767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 491 - 585
Target Start/End: Complemental strand, 42161259 - 42161165
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttctctg 585  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  42161259 agggtttatctcacgtgattgttgagagtgactcaaaagtgcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctctg 42161165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 491 - 584
Target Start/End: Complemental strand, 16712303 - 16712210
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttctct 584  Q
    |||||||||||||||||||||||| ||||||||  ||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  16712303 agggtttatctcacgtgattgttgtgagtgactcaaaagtgcttattgatatggttactaacaattgtaagaccaatggaaccatcccttctct 16712210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 572
Target Start/End: Original strand, 981285 - 981366
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaac 572  Q
    |||||||||||||| ||||||| ||||||||||  |  |||  |||| | ||||||||||| |||||||| |||||||||||    
T  981285 agggtttatctcacttgattgtagagagtgactcaatggtgtttattgacatggttactaagaattgtaacatcaatggaac 981366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 582
Target Start/End: Original strand, 24191030 - 24191119
Alignment:
Q  493 ggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttct 582  Q
    |||||||||||| |||||||||||||||||| |||  ||| |||| |||   |||| || |||||||| ||| ||||||| || ||||||    
T  24191030 ggtttatctcacttgattgttgagagtgactcgaagatgcttattgatacaattacgaataattgtaaaatcgatggaaccattccttct 24191119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 491 - 584
Target Start/End: Complemental strand, 20670282 - 20670189
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttctct 584  Q
    |||||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  20670282 agggtttatctcacgtgattgttgagagtgactcaaaagttcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctct 20670189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 40536556 - 40536479
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatg 568  Q
    ||||| |||||||| ||||||||||||||||||  || |||| |||| ||||||| ||||||||| ||||||||||||    
T  40536556 agggtatatctcacttgattgttgagagtgactcaaaggtgcttattgatatggtcactaacaatcgtaagatcaatg 40536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 12673460 - 12673378
Alignment:
Q  490 tagggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaac 572  Q
    |||||| |||||||| ||||||||||||||||||  || |||| |||||| ||||||||||||||||||||||||||||||||    
T  12673460 tagggtatatctcacttgattgttgagagtgactcaaaggtgcttattaacatggttactaacaattgtaagatcaatggaac 12673378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 495 - 585
Target Start/End: Original strand, 41949563 - 41949653
Alignment:
Q  495 tttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttctctg 585  Q
    ||||||||||||||||||||||||||| |  ||||||| |||| ||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  41949563 tttatctcacgtgattgttgagagtgattcaaaagtgcttattgatatgattactaacaattgcaagatcaatggaaccatccattctctg 41949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 43326650 - 43326572
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatat-ggttactaacaattgtaagatcaatg 568  Q
    ||||||| |||||| ||||||||||||||||||  || |||| ||||||||| ||||||||||||||||||||| ||||    
T  43326650 agggtttgtctcacttgattgttgagagtgactcaaaggtgcttattaatatgggttactaacaattgtaagattaatg 43326572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 46911573 - 46911664
Alignment:
Q  491 agggtttatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttct 582  Q
    ||||| |||||||| ||||||||||||||||||  || |||| |||| | ||||||||||||||||||||||| ||||||||||| ||||||    
T  46911573 agggtatatctcacttgattgttgagagtgactcaaaggtgcttattgacatggttactaacaattgtaagattaatggaactattccttct 46911664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 582
Target Start/End: Original strand, 32993245 - 32993328
Alignment:
Q  499 tctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttct 582  Q
    |||||| ||||||||||||||||||  || |||  |||| |||||||||||||||||||||||||||||||||| || ||||||    
T  32993245 tctcacttgattgttgagagtgactcaaaggtgtttattgatatggttactaacaattgtaagatcaatggaaccattccttct 32993328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 582
Target Start/End: Complemental strand, 39354779 - 39354716
Alignment:
Q  519 tgacttgaaagtgcctattaatatggttactaacaattgtaagatcaatggaactatcccttct 582  Q
    ||||||||| |||| |||| ||| | |||||||||||||||| || |||||||| |||||||||    
T  39354779 tgacttgaaggtgcttattgatacgattactaacaattgtaaaattaatggaaccatcccttct 39354716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 563
Target Start/End: Complemental strand, 15828605 - 15828539
Alignment:
Q  497 tatctcacgtgattgttgagagtgacttgaaagtgcctattaatatggttactaacaattgtaagat 563  Q
    |||||||| |||||||| |||||||||  || || | |||| |||||||||||||||||||||||||    
T  15828605 tatctcacttgattgttaagagtgactcaaatgtacttattgatatggttactaacaattgtaagat 15828539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University