View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_5 (Length: 511)
Name: NF8254_low_5
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 33684565 - 33684099
Alignment:
| Q |
19 |
gtattaagttgtgatgtatggattgaacatatgcaaagccttgattctgatgaagaattgatagaatataatcgttttttcatcataaacaagcattgca |
118 |
Q |
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| T |
33684565 |
gtattaagttgtgatgtatggattgaacatatgcaaagccttgattctgatgaagaattgatagaatagaatcgttttttcatcataaacaagcattgca |
33684466 |
T |
|
| Q |
119 |
tgtctccaacatcaatacacaacccacttatacagcaacatgaacaatgtttctcaaaagatcactaaaaaataactatatcatttgtaaactaatagat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33684465 |
tgtctccaacatcaatacacaacccacttatacagcaacatgaacaatgtttctcaaaagatcactaaaaaataactatatcttttgtaaactaatagat |
33684366 |
T |
|
| Q |
219 |
gttgaagtgttaaactttgagaggacaatatgccttgaaactcaattttgatttcacaagatataatgtgtg-ttgttttagtggtaaacttgacgctgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33684365 |
gttgaagtgttaaactttgagaggacaatatgccttgaaacttaattttgatttcacaagatataatgtgtgtttgttttagtggtaaacttgacgctgc |
33684266 |
T |
|
| Q |
318 |
cttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataatgctaatctaaatgctaaaccaagcaat |
417 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||| |
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| T |
33684265 |
cttgcgtttgagcaaaatcttgtattcttaacttcacaaaatagtggtcaaaaaggtattgagacacgataatgttaatctaaacgctaaaccaagcaat |
33684166 |
T |
|
| Q |
418 |
gcaatattttcatagggagctatctagagtgtagtgtatttgtattttccaagaatgtggatgcaaa |
484 |
Q |
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| T |
33684165 |
gcaatattttcatagggagttatctagagtgtagtgtatttgtattttccaagaatgtggatgcaaa |
33684099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 291 - 420
Target Start/End: Original strand, 8297072 - 8297201
Alignment:
| Q |
291 |
ttgttttagtggtaaacttgacgctgccttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataat |
390 |
Q |
| |
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||||||||||||||||| ||||| | | ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||| ||| ||| |
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| T |
8297072 |
ttgttttagtggtaaacctgacgtggtcgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgggacacgagaat |
8297171 |
T |
|
| Q |
391 |
gctaatctaaatgctaaaccaagcaatgca |
420 |
Q |
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| T |
8297172 |
gctaatctaaatgctaaaccaaacaatgca |
8297201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 291 - 418
Target Start/End: Complemental strand, 31440822 - 31440695
Alignment:
| Q |
291 |
ttgttttagtggtaaacttgacgctgccttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataat |
390 |
Q |
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|
||||||||||||| ||| ||| ||||| |||| ||| |||||| |||||||||||| ||||||| ||| ||||| ||||||| ||||||| |||| ||| |
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| T |
31440822 |
ttgttttagtggttaacctgatgctgctgtgcggttgcgcaaaaacttgtattcttagcttcacagaatggtggtaaaaaaggcattgggatgcgagaat |
31440723 |
T |
|
| Q |
391 |
gctaatctaaatgctaaaccaagcaatg |
418 |
Q |
| |
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|||||| |||| |||||||||| ||||| |
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| T |
31440722 |
gctaatttaaacgctaaaccaaacaatg |
31440695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 33376212 - 33376330
Alignment:
| Q |
294 |
ttttagtggtaaacttgacgctgccttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataatgct |
393 |
Q |
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|||||||| | ||| ||| |||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||| ||| | | |||||| |
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| T |
33376212 |
ttttagtgtttaacctgatgctgccgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgagactccagaatgct |
33376311 |
T |
|
| Q |
394 |
aatctaaatgctaaaccaa |
412 |
Q |
| |
|
||| |||| | |||||||| |
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| T |
33376312 |
aatttaaacgttaaaccaa |
33376330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 7413695 - 7413799
Alignment:
| Q |
291 |
ttgttttagtggtaaacttgacgctgccttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataat |
390 |
Q |
| |
|
||||| |||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||| | ||||||| |||| ||| |
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| T |
7413695 |
ttgttatagtggtacatctgacgttgccgtgcgtttgagcaaaagcttgtattcttaacttcacaaaatggtggtaaaaaatgcattgggatgcgagaat |
7413794 |
T |
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| Q |
391 |
gctaa |
395 |
Q |
| |
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||||| |
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| T |
7413795 |
gctaa |
7413799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 2235115 - 2235219
Alignment:
| Q |
305 |
aacttgacgctgccttgcgtttgagcaaaaccttgtattcttaacttcacaaaatagtggtcaaaaaggtattgggacgcgataatgctaatctaaatgc |
404 |
Q |
| |
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|||||||||||||| || |||| | |||| |||| |||||||||||||||||| | |||||||| || ||| |||||||| ||||| ||| | || || |
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| T |
2235115 |
aacttgacgctgccgtgtgtttttggaaaagcttgacttcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgc |
2235214 |
T |
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| Q |
405 |
taaac |
409 |
Q |
| |
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||||| |
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| T |
2235215 |
taaac |
2235219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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