View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_6 (Length: 430)
Name: NF8254_low_6
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 46666406 - 46666804
Alignment:
| Q |
17 |
tactatgaatctaagcatgcacaaagtcttaccgtgcggttgttaacaagatcctcgtagtaaagaacaacgtgtcgaatgctcttaaaatatgatatgg |
116 |
Q |
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| T |
46666406 |
tactatgaatctaagcatgcacaaagtcttaccgtgcggttgttaacaagatcctcgtagtaaagaacaatgtgtcgaatgcttttaaaatatgatatgg |
46666505 |
T |
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| Q |
117 |
cttttgcaattgtctcatttgttttctttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcat |
216 |
Q |
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| T |
46666506 |
cttttgcaattgtctcatttgttttctttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcat |
46666605 |
T |
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| Q |
217 |
aacaggatcagatttaaaaccaaaaaagattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccatt |
316 |
Q |
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| T |
46666606 |
aacaggatcagatttaaaaccaaaaaagattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccatt |
46666705 |
T |
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| Q |
317 |
caatagcttgacatctttgtcataggagttggctagtacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaactcgtttttg |
415 |
Q |
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| T |
46666706 |
caatagcttgacatctttgtcataggagttggctagtacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaacttgtttttg |
46666804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 413
Target Start/End: Complemental strand, 6117909 - 6117768
Alignment:
| Q |
272 |
agtgacctccattgtagagtgcacatgagacttgtgtgttccattcaatagcttgacatctttgtcataggagttggctagtacagataccattctacgg |
371 |
Q |
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| T |
6117909 |
agtgacctctattgtggagtggacatgagatttgtgggttccattgagctgtttggcatgtttgtcataggaatttgctagcacagatactgatctactt |
6117810 |
T |
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| Q |
372 |
agtaaatttcttctgaacaagaatattgtagaaactcgtttt |
413 |
Q |
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| T |
6117809 |
agcaaattccttcttaaaaggaatattgcagaaactcctttt |
6117768 |
T |
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