View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_7 (Length: 413)
Name: NF8254_low_7
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 6426196 - 6425793
Alignment:
| Q |
1 |
aaatagtgacctcaacacacttctgcttaaagaaaattgcagaatcaatatcacatttcaaaaacccaattgaagttgtaagtcaagagatatcaatctc |
100 |
Q |
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| T |
6426196 |
aaatagtgacctcaacacacttctgcttaaagaaaattgcagaatcaatatcacatttcaaaaacccaattgaagttgtaagtcaagaaatatcaatctc |
6426097 |
T |
|
| Q |
101 |
ttattgttgaataaaacttgattgttcgttggacctgctcgcgcgaactttcatccatgatgtgaatttatagcttgatgccaaactcgatgagagtatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6426096 |
ttattgttgaataaaacttgattgttcgttggacctgctcatgcgaactttcattcatgatgtgaatttatagcttgatgccaaactcgatgagagtatc |
6425997 |
T |
|
| Q |
201 |
gatcaacataaactcgatgacactcttaaaccaatactctttattactactaaacctctaaatcctttcattagcttgagaaagtatgaaagatggattt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6425996 |
gatcaacataaactcgatgacactcttaaacctatactctttattactactaaacctctaaatcctttcattagcttgagaaagtatgaaagatggattt |
6425897 |
T |
|
| Q |
301 |
tgatgagaaattccacaacatcgttgtccnnnnnnncttcacgaatgatatgctcctttggtgatctatcaatacagtagcacaccttgaatttgttcat |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
6425896 |
tgatgagaaattccacaacatcgttgtccaaaaaaacttcacgaatgatatgctcctttgg---tctatcaatacagtagcacaccaagaatttgttcat |
6425800 |
T |
|
| Q |
401 |
ctcactc |
407 |
Q |
| |
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|| |||| |
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| T |
6425799 |
ctaactc |
6425793 |
T |
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