View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8254_low_8 (Length: 334)
Name: NF8254_low_8
Description: NF8254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8254_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 26690078 - 26689769
Alignment:
| Q |
18 |
agccagaagtaaaccaaagcatgaacttcattggtccattttcttcgtcttcaacatatgatcttcttagttgttttacttcattatttctagaacaatc |
117 |
Q |
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| T |
26690078 |
agccagaagtaaaccaaagcatgaacttcattggtccattttcttcgtcttcaacatatgatcttcttagttgttttacttcattatttctagaacaatc |
26689979 |
T |
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| Q |
118 |
caagatatcattttttacaacattctcatggaaatgaacatgctttctttttggcaatcgcaagaagattgatccttgaaaatttggtgaactgaatcca |
217 |
Q |
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| T |
26689978 |
caagatatcattttttacaacattctcatggaaatgaacatgctttctttttggcaatcgcaagaagattgatccttgaaaatttggtgaactgaatcca |
26689879 |
T |
|
| Q |
218 |
ttttgtaattgtgacttaggatagcaataagatacacccaggtccaaacgatactggaaggctatgcattggcacattctcatgcataaatgcttacatt |
317 |
Q |
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| T |
26689878 |
ttttgtaattgtgacttaggatagcaataagatacacccaggtccaaacgatactggaaggctatgcattggcacattctcatgcataaatgcttacatt |
26689779 |
T |
|
| Q |
318 |
gtttataagt |
327 |
Q |
| |
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|||||||||| |
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| T |
26689778 |
gtttataagt |
26689769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 26694236 - 26693924
Alignment:
| Q |
18 |
agccagaagtaaaccaaagcatgaacttcattggtccattttcttcgtcttcaacatatgatcttcttagttgttttacttcattatttctagaacaatc |
117 |
Q |
| |
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||||||| | ||||||||| || | ||||| || ||||||||||| ||||||||| |||||| || ||||||||| |||| ||| |||||| |||||| | |
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| T |
26694236 |
agccagacgcaaaccaaaggataatcttcactgatccattttctttgtcttcaacgtatgatttttttagttgttctactccatcatttctcgaacaaac |
26694137 |
T |
|
| Q |
118 |
caagatatcattttttacaacattctcatggaaatgaacatgctttctttttggcaatcgcaagaagattgatccttgaaaatttggtgaactgaatcca |
217 |
Q |
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|||| || ||||||||| |||||| |||||| | |||||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| |
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| T |
26694136 |
caagctaccattttttataacatttgcatggacagaaacatgttctctttttggcaatcgcaaatagattgatccctgaaaattcggtgaactgaaccca |
26694037 |
T |
|
| Q |
218 |
ttttgtaattgtgacttaggatagcaataagatacacccaggt------ccaaacgatactggaaggctatgcattggcacattctcatgcataaatgct |
311 |
Q |
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||| | |||||||||||||||||||||||| | ||||| || |||||||||| |||||||||||||||| ||||||| || ||| || |||| |
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| T |
26694036 |
tttcgcaattgtgacttaggatagcaataaaaaacaccttcgtcattaaccaaacgatattggaaggctatgcattcacacattcgcaagcagaactgct |
26693937 |
T |
|
| Q |
312 |
tacattgtttata |
324 |
Q |
| |
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||||||||||||| |
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| T |
26693936 |
tacattgtttata |
26693924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 327
Target Start/End: Original strand, 26676062 - 26676321
Alignment:
| Q |
74 |
tatgatcttcttagttgttttacttcattatttctagaacaatccaagatatcattttttacaacattctcatggaaatgaacatgctttctttttggca |
173 |
Q |
| |
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||||||||| ||||||| | |||| || ||||||| |||||| ||||| | |||||| || | ||||||||| | || | |||| ||||||||||||| |
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| T |
26676062 |
tatgatctttttagttgctgtactccagtatttctcgaacaaaccaagcttccattttgtatatcattctcattgtaaaaagcatgttttctttttggca |
26676161 |
T |
|
| Q |
174 |
atcgcaagaagattgatccttgaaaatttggtgaactgaatccattttgtaattgtgacttaggatagcaataagatacacccaggt------ccaaacg |
267 |
Q |
| |
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||||||| ||||| |||||| |||| | || ||||| || || |||||||||||| ||| |||||||||||||||| |||| | | |||| || |
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| T |
26676162 |
atcgcaaaaagatggatcctcgaaattccggagaactaaagccgttttgtaattgtctctttggatagcaataagatataccctgatccctcaccaagcg |
26676261 |
T |
|
| Q |
268 |
atactggaaggctatgcattggcacattctcatgcataaatgcttacattgtttataagt |
327 |
Q |
| |
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||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
26676262 |
atattggaaggctacacattggcacattcgtaagcagaaatgcttacattgtttataagt |
26676321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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