View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8255_high_2 (Length: 470)
Name: NF8255_high_2
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8255_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 42 - 458
Target Start/End: Complemental strand, 44164268 - 44163852
Alignment:
| Q |
42 |
aaattttcaggaagtctgcaacaatatctatagatgatttttatttgacagctgaaggccaggtataaaaaagtgttttctaatatatttttatcaattg |
141 |
Q |
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| T |
44164268 |
aaattttcaggaagtctgcaacaatatctatagatgatttttatttgacagctgaaggccaggtatacaaaagtgttttctaatatatttttatcaattg |
44164169 |
T |
|
| Q |
142 |
atacttccatccttttctttttctttaaagatgacaaaatgtgtctggattgtagaataaactaagagaggctaatccaggaaatgcacttcttgaggta |
241 |
Q |
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| T |
44164168 |
atactcccatctttttcgttttctttaaagatgacaaaatgtgtctggattgtagaataaactaagagaggctaatccaggaaatgcacttcttgaggta |
44164069 |
T |
|
| Q |
242 |
tttacacacgtatatgagaagtagccaattaagtataatctgagaacattgtgctaatgagagctgaaatatgttttctttccagtatcgtggaaatgct |
341 |
Q |
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| T |
44164068 |
tttacacacgtatatgagaagtagccaattaagtataatctgagaacattgcgctaatgagagctgaaatatgttttctttccagtatcgtggaaatgct |
44163969 |
T |
|
| Q |
342 |
ggaagccatgatcttcctttttctgttgaaactttgacagctttaaccaaaatgtctagagaaggtggttatttgaactctcttttttcttcctctatta |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44163968 |
ggaagccatgatcttcctttttctgttgaaactttgacagctttaaccaaaatgtctagagaaggtggttatttgaactctcttttttcttcctttatta |
44163869 |
T |
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| Q |
442 |
tcttgtattttaagtat |
458 |
Q |
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| T |
44163868 |
tcttgtattttaagtat |
44163852 |
T |
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