View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8255_high_6 (Length: 207)
Name: NF8255_high_6
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8255_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36832572 - 36832757
Alignment:
| Q |
1 |
cttttatcagaagtgtcgtcggtgctacaaacctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctc |
100 |
Q |
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| T |
36832572 |
cttttatcagaagtgtcg---gtgttacagacctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctc |
36832668 |
T |
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| Q |
101 |
ctcaactgatgagcactcatattgctcagcagcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccactt |
189 |
Q |
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| T |
36832669 |
ctcaactgatgagcactcatattgctcagcagcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccactt |
36832757 |
T |
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Back To:
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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 46837993 - 46837836
Alignment:
| Q |
31 |
acctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctcctcaactgatgagcactcatattgctcagc |
130 |
Q |
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||||||||||||||||||| |||||||| || |||| ||||||||||| || |||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
46837993 |
acctggtcatgaagaaataggagaagatgttagttctaaacaccctctcgagtcttggttcatcaatctcctcaactgaaccacactcatactgctcagc |
46837894 |
T |
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| Q |
131 |
agcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccact |
188 |
Q |
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|||||||| |||||||| ||||| | ||||||||||| | |||||||||| |||| |
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| T |
46837893 |
tgcattgttgacaagaatgtcaatacgtccataagcattgatgatctcatcaatcact |
46837836 |
T |
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