View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8255_low_3 (Length: 412)
Name: NF8255_low_3
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8255_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 87 - 403
Target Start/End: Complemental strand, 48794690 - 48794374
Alignment:
| Q |
87 |
agttatcatcatagttttgcgaagaacttccactgttactgttgcatacagttggtggaagaaatggctacgttttcaatcggaacacacttatctatgt |
186 |
Q |
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| T |
48794690 |
agttatcatcatagttttgcgaagaacttccactgttactgttgcatacagttggtggaagaaatggctacgttttcaatcggaacacacttatctatgt |
48794591 |
T |
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| Q |
187 |
tccaacattcacggaattctagactttcatcccacacaattcaattttcgccgccacaatctcaatccttctttacttcttcatcttctccttcttgtag |
286 |
Q |
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| T |
48794590 |
tccaacattcacggaattctagactttcatcccacacaattcaattttcgccgccacaatctcaatccttctttacttcttcatcttctccttcttgtag |
48794491 |
T |
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| Q |
287 |
aaccagatttggagttcccaatcccaagttactccgtagcaatgtattggtacgcgctgaagacaaacctagagattctaactcacaaacttcccagcaa |
386 |
Q |
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| T |
48794490 |
aaccagatttggagttcccaatcccaagttactccgtagcaatgtattggtacgcgctaaagacaaacctagagattctaactcacaaacttcccagcaa |
48794391 |
T |
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| Q |
387 |
cagttccaggttcttct |
403 |
Q |
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| T |
48794390 |
cagttccaggttcttct |
48794374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 48794766 - 48794720
Alignment:
| Q |
18 |
atattcttgccatgaatgaaatttaactaactaattaattaattaat |
64 |
Q |
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| T |
48794766 |
atattcttgccatgaatgaaatttaactaactaattaattaattaat |
48794720 |
T |
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