View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8255_low_4 (Length: 411)
Name: NF8255_low_4
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8255_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Complemental strand, 35542241 - 35541868
Alignment:
| Q |
24 |
ggtgtcgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgaga |
123 |
Q |
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| T |
35542241 |
ggtgttgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactgccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgaga |
35542142 |
T |
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| Q |
124 |
attttggtggctgtggagttcccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35542141 |
attttggtggctgtggagttcccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtga |
35542042 |
T |
|
| Q |
224 |
gtttgggataacagaaaagacagagtttgttttgtttgttaaaccttgtggcgtgtttgggtttctacctctaacaccgattgatgcagagattgttttg |
323 |
Q |
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| T |
35542041 |
gtttgggataaaagaaaagacagagtttgttttgtttgttaaaccttgtggcgtgtttggttttctacctctaacaccgattgatgcagagattgttttg |
35541942 |
T |
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| Q |
324 |
tagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagtagttttt |
397 |
Q |
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| T |
35541941 |
tagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagtagttttt |
35541868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 35509546 - 35509347
Alignment:
| Q |
24 |
ggtgtcgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgaga |
123 |
Q |
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| T |
35509546 |
ggtgttgttggcaatgttaatgaaacattgttaatagcccatttagtgaaactaccgattttgttttgtgtattgaggaggtgaatagtgcggtgtgagg |
35509447 |
T |
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| Q |
124 |
attttggtggctgtggagttcccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtga |
223 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| |||| |||||||||||| |
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| T |
35509446 |
attttggtggctgtggatttcccattttggaaatgatttgttttgtgaatgctttgctgtgatcggtatcgttccataatggtgtgactggtggtggtga |
35509347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 35527743 - 35527546
Alignment:
| Q |
24 |
ggtgtcgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgaga |
123 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||||||| |||| ||||| || | |
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| T |
35527743 |
ggtgttgttggcaatgttaatgaaacattgttaatagcccatttaatgaaattacctattttgctttgtgtgttgaggaggtaaatcaagcggtctgcgg |
35527644 |
T |
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| Q |
124 |
attttggtggctgtggagttcccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggt |
221 |
Q |
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| T |
35527643 |
tttttggtggctgtggtgttcccattctggaaatgatttgttttgtgaattctttgctgcgctcgatatcgtcccataagggagtgattggtggtggt |
35527546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 35509330 - 35509242
Alignment:
| Q |
309 |
gcagagattgttttgtagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagtagttttt |
397 |
Q |
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| T |
35509330 |
gcagagagtggtttgtagttaaggattgttagggcttgtggtgtgcttggttttctacctctaactccgattgaaagccagtagttttt |
35509242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 35527512 - 35527482
Alignment:
| Q |
324 |
tagttaaggattgttagggcttgtggtgtgt |
354 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35527512 |
tagttaaggattgttagggcttgtggtgtgt |
35527482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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