View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8255_low_5 (Length: 389)

Name: NF8255_low_5
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8255_low_5
NF8255_low_5
[»] chr7 (2 HSPs)
chr7 (1-374)||(1395969-1396342)
chr7 (8-51)||(23687424-23687467)
[»] chr2 (4 HSPs)
chr2 (8-168)||(23479589-23479752)
chr2 (8-97)||(18810467-18810556)
chr2 (275-315)||(23479445-23479485)
chr2 (1-33)||(18428943-18428975)
[»] chr1 (7 HSPs)
chr1 (3-85)||(39435149-39435231)
chr1 (26-85)||(39433917-39433976)
chr1 (26-82)||(34547955-34548011)
chr1 (300-358)||(3544019-3544077)
chr1 (27-85)||(11468043-11468101)
chr1 (13-63)||(12690221-12690271)
chr1 (1-63)||(31912979-31913041)
[»] scaffold0300 (1 HSPs)
scaffold0300 (22-63)||(8144-8185)
[»] chr6 (2 HSPs)
chr6 (26-82)||(12913705-12913761)
chr6 (8-187)||(13737720-13737899)
[»] chr5 (1 HSPs)
chr5 (12-48)||(18410090-18410126)
[»] chr4 (3 HSPs)
chr4 (26-82)||(37872103-37872159)
chr4 (13-63)||(43497916-43497966)
chr4 (26-74)||(39061113-39061161)
[»] chr8 (1 HSPs)
chr8 (13-63)||(8445690-8445740)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 1396342 - 1395969
Alignment:
Q  1 acaaacatcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagcataggacaccaaacgt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1396342 acaaacatcagaagaaccaatcgatcatccaaagaaagatttctactcttcgaacctgataatattgttttaattcgatcaagcataggacaccaaacgt 1396243  T
Q  101 tcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatggaggcagcctctatcaactaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1396242 tcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatgtaggcagcctctatcaactaaga 1396143  T
Q  201 atcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaagaaggtgaagcaaagcttttaaagctctaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1396142 atcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaaaaaggtgaagcaaagcttttaaagctctaata 1396043  T
Q  301 ttagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaatagctagagacattat 374  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1396042 ttagcccaacttttaacaccaactaacaaagtattatcagcaaattaaagatgagaaatagctagagacattat 1395969  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 23687467 - 23687424
Alignment:
Q  8 tcagaagaaccaatcgatcacccaaagaaagatttctactcttc 51  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  23687467 tcagaagaaccaatcaaccacccaaagaaagatttatactcttc 23687424  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 23479752 - 23479589
Alignment:
Q  8 tcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagcataggacaccaaacgttcaagtt 107  Q
    |||| |||||||||||| ||||||||||||| |||||||||||| |||| |||||| |||  ||||||||||| | || ||||| |||||  || |  ||    
T  23479752 tcaggagaaccaatcgaccacccaaagaaaggtttctactcttccaaccagataattttgacttaattcgatctatcaaaggacgccaaaaatttagctt 23479653  T
Q  108 acgtgagtctccaccaataa---gaatctccaagtaaacaaaaggtaaacgacccattttacaa 168  Q
     || ||||||||||||||||   | ||| |||||||||  ||||||||||||||||||||||||    
T  23479652 tcgagagtctccaccaataataggtatccccaagtaaaggaaaggtaaacgacccattttacaa 23479589  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 18810556 - 18810467
Alignment:
Q  8 tcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagcataggacaccaaa 97  Q
    |||||||||||||||| ||||  |||||||||||| |||||||  |||| | |||| ||| ||||||||||||||||| ||||| |||||    
T  18810556 tcagaagaaccaatcggtcactgaaagaaagatttatactctttcaacccgttaatcttgatttaattcgatcaagcaaaggacgccaaa 18810467  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 23479485 - 23479445
Alignment:
Q  275 gaagcaaagcttttaaagctctaatattagcccaactttta 315  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  23479485 gaagcaaagcttttaaaactctaatattagccgaactttta 23479445  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18428975 - 18428943
Alignment:
Q  1 acaaacatcagaagaaccaatcgatcacccaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  18428975 acaaacatcagaagaaccaatcgaccacccaaa 18428943  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 39435149 - 39435231
Alignment:
Q  3 aaacatcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagca 85  Q
    |||| |||||||| |||| | | ||||||||||||| |||||||||||| ||||| |||||||| |||| ||| |||||||||    
T  39435149 aaacttcagaagagccaaacaaccacccaaagaaaggtttctactcttccaaccttataatattttttttattagatcaagca 39435231  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 39433917 - 39433976
Alignment:
Q  26 cacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagca 85  Q
    ||||||||||||| |||||||||||| ||||| |||||||| |||| ||| |||||||||    
T  39433917 cacccaaagaaaggtttctactcttccaaccttataatattttttttattagatcaagca 39433976  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 34548011 - 34547955
Alignment:
Q  26 cacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaa 82  Q
    |||||||||| ||||||||||||||| |||| |||||| ||| |||||| |||||||    
T  34548011 cacccaaagagagatttctactcttccaacccgataatcttgatttaatacgatcaa 34547955  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 3544077 - 3544019
Alignment:
Q  300 attagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaa 358  Q
    |||||||||||||||||| |||| ||||| ||||| || |||||||| |||||| ||||    
T  3544077 attagcccaacttttaactccaagtaacagagtatcatcagcaaattgaagatgggaaa 3544019  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 11468101 - 11468043
Alignment:
Q  27 acccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagca 85  Q
    |||||||||||||||| |||||||| |||| |||||| |||  ||||| ||||||||||    
T  11468101 acccaaagaaagatttttactcttccaacccgataatcttgacttaatgcgatcaagca 11468043  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12690221 - 12690271
Alignment:
Q  13 agaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataat 63  Q
    ||||| || ||| |||||||||||||||||||||||||| |||| ||||||    
T  12690221 agaactaaacgaccacccaaagaaagatttctactcttccaaccagataat 12690271  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31912979 - 31913041
Alignment:
Q  1 acaaacatcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataat 63  Q
    |||||| | |||||||| || ||| |||||||||| |||||| |||||||| |||||||||||    
T  31912979 acaaactttagaagaactaaacgaccacccaaagatagatttttactcttctaacctgataat 31913041  T

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Target: scaffold0300 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 8185 - 8144
Alignment:
Q  22 cgatcacccaaagaaagatttctactcttcaaacctgataat 63  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  8185 cgatcacccaaagaaagatttctactcttccaaccagataat 8144  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 12913705 - 12913761
Alignment:
Q  26 cacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaa 82  Q
    |||||||||| ||||||||||||||| |||| |||||| ||| |||||| |||||||    
T  12913705 cacccaaagagagatttctactcttccaacccgataatcttgatttaatacgatcaa 12913761  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 13737720 - 13737899
Alignment:
Q  8 tcagaagaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaagcataggacac-caaacgttcaagt 106  Q
    ||||||||| |||||||| |||||||||||  ||| |||||||| |||||||| || | | |||||| || ||||||| ||| | |  ||| |||||| |    
T  13737720 tcagaagaatcaatcgat-acccaaagaaatttttttactcttccaacctgatcatctagatttaatgcgctcaagcaaaggtctcaaaaaagttcaact 13737818  T
Q  107 tacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatggaggcagcct 187  Q
    |||| ||||| || |||||| |  || |||||||||  ||| |||  | ||||||||||| ||| ||||  ||||||||||    
T  13737819 tacgagagtcacccccaatatgtgtccccaagtaaaggaaaagtagtctacccattttaccatttagaacagaggcagcct 13737899  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 18410090 - 18410126
Alignment:
Q  12 aagaaccaatcgatcacccaaagaaagatttctactc 48  Q
    ||||||||||||||||||||||||||| |||||||||    
T  18410090 aagaaccaatcgatcacccaaagaaaggtttctactc 18410126  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 37872103 - 37872159
Alignment:
Q  26 cacccaaagaaagatttctactcttcaaacctgataatattgttttaattcgatcaa 82  Q
    |||||||||| ||||||||||||||| |||| |||||| ||| |||||| |||||||    
T  37872103 cacccaaagagagatttctactcttctaacccgataatcttgatttaatacgatcaa 37872159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 43497966 - 43497916
Alignment:
Q  13 agaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataat 63  Q
    ||||| || ||| |||||||||||||||||||||||||| |||| ||||||    
T  43497966 agaactaaacgaccacccaaagaaagatttctactcttccaaccagataat 43497916  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 39061113 - 39061161
Alignment:
Q  26 cacccaaagaaagatttctactcttcaaacctgataatattgttttaat 74  Q
    ||||||| |||| ||||||||||||| ||||||||||| ||| ||||||    
T  39061113 cacccaacgaaatatttctactcttccaacctgataatcttgatttaat 39061161  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8445690 - 8445740
Alignment:
Q  13 agaaccaatcgatcacccaaagaaagatttctactcttcaaacctgataat 63  Q
    ||||| || ||| |||||||||||||||||||||||||| |||| ||||||    
T  8445690 agaactaaacgaccacccaaagaaagatttctactcttccaaccagataat 8445740  T

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