View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8255_low_6 (Length: 338)

Name: NF8255_low_6
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8255_low_6
NF8255_low_6
[»] chr4 (3 HSPs)
chr4 (71-326)||(2878566-2878821)
chr4 (1-325)||(2895974-2896298)
chr4 (48-326)||(2888068-2888346)
[»] chr2 (3 HSPs)
chr2 (93-272)||(44222001-44222180)
chr2 (93-313)||(44209806-44210026)
chr2 (93-272)||(44232827-44233006)
[»] chr7 (1 HSPs)
chr7 (168-214)||(39563086-39563132)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 71 - 326
Target Start/End: Complemental strand, 2878821 - 2878566
Alignment:
Q  71 tttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttg 170  Q
    ||||||||||||||| | ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878821 tttcacttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttg 2878722  T
Q  171 cgccaatatgaccaacgttgtttccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878721 cgccaatatgaccaacgttgtttccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagag 2878622  T
Q  271 caagttttcccaattcttctataagttgcttatttctcctgaacaatagtgtataa 326  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878621 caggttttcccaattcttctataagttgcttatttctcctgaacaatagtgtataa 2878566  T

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Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2895974 - 2896298
Alignment:
Q  1 agaagttaacattcaagttggaaagaaaatcggactaactataatatttcttatttttcagataatgaagtttcacttactatttccttccaaggttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2895974 agaagttaacattcaagttggaaagaaaatcggactaactataatatttcttatttttcacataatgaagtttcacttactatttccttccaaggttcca 2896073  T
Q  101 gaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgcgccaatatgaccaacgttgtttccacaag 200  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||  ||| |||||||| ||||||||| |||||||||| | |    
T  2896074 gaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatgaccaatgttgtttccatagg 2896173  T
Q  201 caagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagcaagttttcccaattcttctataagttgct 300  Q
    |||||||||||||| |   ||||||||||||||||||||   | ||||| ||||||||| |||||| ||||| |||| || |||||| ||||||||||||    
T  2896174 caagccaagcattggatccaaaatgattgtgagtattgggcggagaaatgaagatccttagaaccaggagcaggtttgcctaattctactataagttgct 2896273  T
Q  301 tatttctcctgaacaatagtgtata 325  Q
    | |||||||| || |||||| ||||    
T  2896274 tgtttctcctaaagaatagtttata 2896298  T

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Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 2888346 - 2888068
Alignment:
Q  48 ttcttatttttcagataatgaagtttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacc 147  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| | ||| || |||||||||||||||||  ||||||||  ||  ||| ||||||    
T  2888346 ttcttatttttcagataatgaaagttcacttactatttccttccaagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacc 2888247  T
Q  148 taacagcagtgtataacgggttgcgccaatatgaccaacgttgtttccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaa 247  Q
    | |||| |||||||  |||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||  || |||    
T  2888246 tcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaa 2888147  T
Q  248 ataaagatccttggaaccaagagcaagttttcccaattcttctataagttgcttatttctcctgaacaatagtgtataa 326  Q
    ||||||||| || |||||| | ||| |||| || |||||||||||||||||||| |||||||||||||||||| |||||    
T  2888146 ataaagatcatttgaaccaggtgcaggtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataa 2888068  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 272
Target Start/End: Original strand, 44222001 - 44222180
Alignment:
Q  93 aggttccagaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgcgccaatatgaccaacgttgtt 192  Q
    |||| ||||||||||||||||||||||||  ||||||| ||||  ||| ||||||| ||||||||||||   || || ||||||||||||||||||||||    
T  44222001 aggtcccagaacattgttccaaacatcaagcctatgaaggtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44222100  T
Q  193 tccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagca 272  Q
    |||| ||||| |||  ||||||||| || || || || ||| ||||  ||||||||| ||||||||| |||||| |||||    
T  44222101 tccataagcaggcctggcattgaaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagca 44222180  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 44209806 - 44210026
Alignment:
Q  93 aggttccagaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgcgccaatatgaccaacgttgtt 192  Q
    |||| |||||||||||||||||||||||| |||||||| || |  ||| ||||||| ||||||||||||   || || ||||||||||||||||||||||    
T  44209806 aggtcccagaacattgttccaaacatcaaggctatgaatgtcgtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44209905  T
Q  193 tccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagcaagttttcccaattcttctat 292  Q
    |||| ||||| |||  |||||| || || || || || ||| ||||  ||||||||| ||||||||| |||||| ||||| |    || | |||||  ||    
T  44209906 tccataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgccaagttcttgaat 44210005  T
Q  293 aagttgcttatttctcctgaa 313  Q
    ||||||||| |||||||||||    
T  44210006 aagttgcttgtttctcctgaa 44210026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 272
Target Start/End: Original strand, 44232827 - 44233006
Alignment:
Q  93 aggttccagaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgcgccaatatgaccaacgttgtt 192  Q
    |||| ||||||||||||||||||||||||  ||||||| ||||  ||| ||||||| ||||||||||||   || || ||||||||||||||||||||||    
T  44232827 aggtcccagaacattgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44232926  T
Q  193 tccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagca 272  Q
    |||| ||||| |||  |||||| || || || || || ||| ||||  ||||||||| ||||||||| |||||| |||||    
T  44232927 tccataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagca 44233006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 39563086 - 39563132
Alignment:
Q  168 ttgcgccaatatgaccaacgttgtttccacaagcaagccaagcattg 214  Q
    ||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  39563086 ttgcgccaataagaccaatgttgtttccataagcaagccatgcattg 39563132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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