View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8255_low_7 (Length: 226)
Name: NF8255_low_7
Description: NF8255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8255_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 25940 - 25745
Alignment:
| Q |
17 |
ctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataa |
116 |
Q |
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| T |
25940 |
ctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataa |
25841 |
T |
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| Q |
117 |
ataatggtgtctaacacttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgtgaactttttg |
213 |
Q |
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| T |
25840 |
ataatggtgtc-agcacttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgtgaacattttg |
25745 |
T |
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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 21352527 - 21352357
Alignment:
| Q |
32 |
aggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaac |
131 |
Q |
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| T |
21352527 |
aggatgctgaacaagcttatgtaattatgagagactggatatttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aac |
21352429 |
T |
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| Q |
132 |
acttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgt |
203 |
Q |
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| T |
21352428 |
acttgcgtcttaacatgcatatgatttttgtatttgtagactgtctgtcaactttcctatacaattttttgt |
21352357 |
T |
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