View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8256_high_4 (Length: 250)

Name: NF8256_high_4
Description: NF8256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8256_high_4
NF8256_high_4
[»] chr8 (1 HSPs)
chr8 (27-237)||(13564606-13564816)
[»] chr2 (3 HSPs)
chr2 (1-237)||(30626047-30626283)
chr2 (1-237)||(30662998-30663234)
chr2 (1-237)||(30671678-30671914)
[»] chr7 (1 HSPs)
chr7 (1-249)||(29623106-29623354)
[»] chr1 (3 HSPs)
chr1 (5-249)||(10415669-10415913)
chr1 (5-250)||(10420556-10420801)
chr1 (102-223)||(10410075-10410196)
[»] chr5 (8 HSPs)
chr5 (47-249)||(35366824-35367026)
chr5 (69-223)||(35754804-35754958)
chr5 (49-249)||(35385976-35386176)
chr5 (5-237)||(35410649-35410881)
chr5 (90-249)||(35423629-35423788)
chr5 (110-249)||(35376370-35376509)
chr5 (70-221)||(35370238-35370390)
chr5 (92-166)||(35437060-35437134)
[»] chr3 (1 HSPs)
chr3 (57-172)||(1153787-1153902)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 13564816 - 13564606
Alignment:
Q  27 atgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  13564816 atgtccaccctttgagaaaagctgagataatgattttcagttccttcgttattgtgcaacatcttttctagactaccattagacatgaactcaaaaacaa 13564717  T
Q  127 tagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagc 226  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13564716 tagccttgaaatcgtcacccttattatcaatacttgaacattaaggaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagc 13564617  T
Q  227 cgtaaaactct 237  Q
    |||||||||||    
T  13564616 cgtaaaactct 13564606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30626283 - 30626047
Alignment:
Q  1 ccaatgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagact 100  Q
    ||||||||| |||||  |||||||||||||| |||||||| |  | |||||||| |||| || |||   |||||||||||||||    ||||||||||||    
T  30626283 ccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagact 30626184  T
Q  101 accattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttc 200  Q
     || |||| ||||||||||||||||||||||| ||| ||||||||||||| ||| || |||||||| || ||||||||||| ||| ||||||||||||||    
T  30626183 ccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctattcttgaacaacatgtaagaatcttgacaagatttcggtgcttc 30626084  T
Q  201 atctttcctaaagctttgcattcagccgtaaaactct 237  Q
    |||||||| ||||||||||||||||| || |||||||    
T  30626083 atctttcccaaagctttgcattcagctgtgaaactct 30626047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30663234 - 30662998
Alignment:
Q  1 ccaatgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagact 100  Q
    ||||||||| |||||  |||||||||||||| |||||||| |  | |||||||| |||| || |||   |||||||||||||||    ||||||||||||    
T  30663234 ccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagact 30663135  T
Q  101 accattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttc 200  Q
     || |||| ||||||||||||||||||||||| ||| ||||||||||||| ||| |  |||||||| || ||||||||||| ||| ||||||||||||||    
T  30663134 ccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgcttc 30663035  T
Q  201 atctttcctaaagctttgcattcagccgtaaaactct 237  Q
    |||||||| ||||||||||||||||| || |||||||    
T  30663034 atctttcccaaagctttgcattcagctgtgaaactct 30662998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30671914 - 30671678
Alignment:
Q  1 ccaatgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagact 100  Q
    ||||||||| |||||  |||||||||||||| |||||||| |  | |||||||| |||| || |||   |||||||||||||||    ||||||||||||    
T  30671914 ccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagact 30671815  T
Q  101 accattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttc 200  Q
     || |||| ||||||||||||||||||||||| ||| ||||||||||||| ||| |  |||||||| || ||||||||||| ||| ||||||||||||||    
T  30671814 ccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgcttc 30671715  T
Q  201 atctttcctaaagctttgcattcagccgtaaaactct 237  Q
    |||||||| ||||||||||||||||| || |||||||    
T  30671714 atctttcccaaagctttgcattcagctgtgaaactct 30671678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 29623106 - 29623354
Alignment:
Q  1 ccaatgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagact 100  Q
    ||||||||| |||||  |||||||||||||| | |||||| |  | | |||||| |||  || ||| |||||| |||||||||||| |||||||||||||    
T  29623106 ccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttgagattatggcttccagatccttcattatcgtgcaacatcttttctagact 29623205  T
Q  101 accattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttc 200  Q
       ||||| ||||||||||||||||||||||| |||||| ||||| |||| ||||| ||||||||| ||||| || ||||| ||| |||| ||||| |||    
T  29623206 catattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttgacaagattccggtgtttc 29623305  T
Q  201 atctttcctaaagctttgcattcagccgtaaaactctctgctactccac 249  Q
    |||||||||| || ||| ||||| ||  | ||||||| |||| ||||||    
T  29623306 atctttcctagagatttacattctgcaatgaaactctttgctgctccac 29623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 10415669 - 10415913
Alignment:
Q  5 tgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactacca 104  Q
    ||||| |||||  |||||||| ||||| | |||||| |  | |||||||| |||| || |||  ||||||||||||||||   ||||||| ||||| ||     
T  10415669 tgcatgagctagatcaagagcgatgtctaacctttgtgccaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccagactcccc 10415768  T
Q  105 ttagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatct 204  Q
    |||| ||||||||||||||||||||||| |||||| ||||| |||| ||||| ||||||||| ||||| || || || ||| |||| |||||||||||||    
T  10415769 ttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatct 10415868  T
Q  205 ttcctaaagctttgcattcagccgtaaaactctctgctactccac 249  Q
    |||||||||| ||||||||  || | ||||||| |||| ||||||    
T  10415869 ttcctaaagcattgcattcctccatgaaactctttgctgctccac 10415913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 10420556 - 10420801
Alignment:
Q  5 tgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactacca 104  Q
    ||||| |||||  |||||||||||||| ||||||||    | |||||||| |||| || |||  ||||| ||||||||||    |||||||||||| ||     
T  10420556 tgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctgagattatgaattccagacccttctttatcgtgcagaagcttttctagactcccc 10420655  T
Q  105 ttagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatct 204  Q
    |||| ||||||||||||||||||||||| ||| || |||||||||| |||||  |||||||| ||||| || ||||| ||| | |||||||| |||||||    
T  10420656 ttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcggtgtttcatct 10420755  T
Q  205 ttcctaaagctttgcattcagccgtaaaactctctgctactccaca 250  Q
    |||||| ||||| || ||| ||  | ||||||| |||| |||||||    
T  10420756 ttcctagagcttcgcgttctgctttgaaactctttgctcctccaca 10420801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 10410075 - 10410196
Alignment:
Q  102 ccattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttca 201  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||| |||| ||||| ||||||||| ||||| || ||||||||| |||| ||||||||||    
T  10410075 ccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttaacaagattccggtgcttca 10410174  T
Q  202 tctttcctaaagctttgcattc 223  Q
    | ||||| | ||||||||||||    
T  10410175 tgtttcccagagctttgcattc 10410196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 35367026 - 35366824
Alignment:
Q  47 gctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcaccc 146  Q
    |||||||| ||||||| |||  ||||||||||| ||||    |||||||||||| || |||| ||||||||||||||||||||||| ||| || ||||||    
T  35367026 gctgagattatgatttccagacccttcgttatcatgcagaagcttttctagacttcccttaggcatgaactcaaaaacaatagccttgaactcttcaccc 35366927  T
Q  147 ttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactctctgctactc 246  Q
    |||| |||||| |||||||| ||||| || ||||| ||| |||||||||||||||||||||||| |||||  ||||| ||  | ||||||| |||| |||    
T  35366926 ttataatcaatgcttgaacaacaagttaggatcttgacaagatttcggtgcttcatctttcctagagcttcacattctgctttgaaactctttgctgctc 35366827  T
Q  247 cac 249  Q
    |||    
T  35366826 cac 35366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 35754958 - 35754804
Alignment:
Q  69 ccttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatc 168  Q
    ||||| ||||||||||||  |||||| ||||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||| ||||| ||||||||| |    
T  35754958 ccttcattatcgtgcaacaacttttcaagactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattataatcaacacttgaacaac 35754859  T
Q  169 aagtaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattc 223  Q
    |||| | |||||| ||| |||| ||||||||||||||||| || || ||||||||    
T  35754858 aagttaaaatcttgacaagattccggtgcttcatctttcccaatgcattgcattc 35754804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 35386176 - 35385976
Alignment:
Q  49 tgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcaccctt 148  Q
    |||||| |||||||||||  ||||| |||| ||||||   |||||| |||||  |||| ||||||||||||||||||||||||| |||||| ||||||||    
T  35386176 tgagattatgattttcagacccttcattattgtgcaaaaacttttcaagactctcatttgacatgaactcaaaaacaatagccttgaaatcttcaccctt 35386077  T
Q  149 attatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactctctgctactcca 248  Q
    || ||||| ||||||||| || || || | ||| ||| ||||  |||||||||||||||| | ||| |||||||| ||| | ||||||| |||| |||||    
T  35386076 ataatcaacacttgaacaacaggttaggaccttgacaagattctggtgcttcatctttcccagagcattgcattctgccatgaaactctttgctgctcca 35385977  T
Q  249 c 249  Q
    |    
T  35385976 c 35385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 35410881 - 35410649
Alignment:
Q  5 tgcataagctatgtcaagagcaatgtccaccctttgagaaaagctgagataatgattttcagttccttcgttatcgtgcaacgtcttttctagactacca 104  Q
    ||||| |||||  |||||||||||||| | |||||| |  | | |||||| |||||||||||  ||||||||||| |||||   |||||||||| | |||    
T  35410881 tgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattatgattttcagacccttcgttatcatgcaaaaacttttctagattccca 35410782  T
Q  105 ttagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatct 204  Q
    |||| ||| ||||||||||||||||||| ||| || ||||| |||| ||||| ||||||||| || || || || || ||| |||| |||||| ||||||    
T  35410781 ttaggcattaactcaaaaacaatagccttgaactcttcaccattataatcaacacttgaacaacacgttaggattttgacaagattacggtgcctcatct 35410682  T
Q  205 ttcctaaagctttgcattcagccgtaaaactct 237  Q
    ||| |||||| |||||||| ||| | |||||||    
T  35410681 ttcttaaagcattgcattccgccatgaaactct 35410649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 35423788 - 35423629
Alignment:
Q  90 ttttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgat 189  Q
    ||||||||| | ||| ||| |||||||||||||||||| ||||  ||||| ||||| |||| ||||| ||||||||| ||||| || || || ||| |||    
T  35423788 ttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggattttcacaagat 35423689  T
Q  190 ttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactctctgctactccac 249  Q
    | ||||||||||||||||||||||| ||||||||  || | ||||||| |||| ||||||    
T  35423688 tacggtgcttcatctttcctaaagcattgcattccaccatgaaactctttgctgctccac 35423629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 249
Target Start/End: Complemental strand, 35376509 - 35376370
Alignment:
Q  110 catgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaacatcaagtaagaatcttaacacgatttcggtgcttcatctttcct 209  Q
    |||||||||||||||||| ||||  ||||| ||||| |||| ||||| ||||||||| ||||| || || || ||| |||| ||||||||||||||||||    
T  35376509 catgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcct 35376410  T
Q  210 aaagctttgcattcagccgtaaaactctctgctactccac 249  Q
    ||||| |||||||| ||  | ||||||| |||| ||||||    
T  35376409 aaagcattgcattccgcaatgaaactctttgctgctccac 35376370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 35370390 - 35370238
Alignment:
Q  70 cttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaatagcc-tggaaatcgtcacccttattatcaatacttgaacatc 168  Q
    |||||||| | |||||| | ||||||| ||| ||||| | |||||||||||||||||||||| ||||| || ||||| |||| ||||| |||||| || |    
T  35370390 cttcgttaccatgcaacatgttttctaaactcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaac 35370291  T
Q  169 aagtaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcat 221  Q
    | || || || || ||| |||| |||||| |||||||||||||||| ||||||    
T  35370290 acgttaggattttgacaagattacggtgcctcatctttcctaaagcattgcat 35370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 35437134 - 35437060
Alignment:
Q  92 ttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaatacttgaaca 166  Q
    ||||||||| ||  ||| |||||| |||||||| ||||||| |||| | ||||| |||| |||||||||||||||    
T  35437134 ttctagactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaaca 35437060  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 1153902 - 1153787
Alignment:
Q  57 tgattttcagttccttcgttatcgtgcaacgtcttttctagactaccattagacatgaactcaaaaacaatagcctggaaatcgtcacccttattatcaa 156  Q
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T  1153902 tgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgcaatcaa 1153803  T
Q  157 tacttgaacatcaagt 172  Q
    ||||||| || |||||    
T  1153802 tacttgagcaacaagt 1153787  T

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