View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8256_low_1 (Length: 534)
Name: NF8256_low_1
Description: NF8256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8256_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Original strand, 29940783 - 29941284
Alignment:
| Q |
16 |
catatatagataggaacataaaaatgtcagtactagttagtagtgcagcacaagaaaagcaaaataaaataccttaagaacatcttgctgaggtgaagaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29940783 |
catatatagataggaacataaaaatgtcagtactagttagtagtgcagcacaagaaaagcaaaataaaataccttaagaacattttgctgaggtgaagaa |
29940882 |
T |
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| Q |
116 |
gataacacagaagagagaagctcagtgctatttcttgcaacatcaaaagcttcctttgtttgttcaggcttgagactcggcacaggattttcacgctgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29940883 |
gataacacagaagagagaagctcagtgctatttcttgcaacatcaaaagcttcctttgtttgttcaggcttgagactcggcacaggattttcacgctgaa |
29940982 |
T |
|
| Q |
216 |
taagatgtgcaagactgcgatcaggctgagtatcgtgctgaataagatgtccaagactgtgatcaatctctggtgcagagggagcgtgataatgagttaa |
315 |
Q |
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| T |
29940983 |
taagatgtgcaagactgcgatcaagctgagtatcgtgctgaataagatgtccaagactgtgatcaatctctggtgcagagggagcgtgataatgagttaa |
29941082 |
T |
|
| Q |
316 |
aataggagccgagctttcattgttacgaccagggaaccgaatgccccttgatttcaaactctgcaacagaaaatgtatataaaaccattcatactctgga |
415 |
Q |
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| T |
29941083 |
aataggagccgagctttcattgttacgaccagggaaccgaatgccccttgatttcaaactctgcaacagaaaatgtatataaaaccattcatactctgga |
29941182 |
T |
|
| Q |
416 |
gttggttcatg-aaatcaaagtttctatgaccaagtaatatggaaaacgattaatgttgcttcccccgtctttatccacatcttatagcttaagttcaga |
514 |
Q |
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| T |
29941183 |
gttggttcatgaaaatcaaagtttctatgaccaagtaatatggaaaacgattaatgttgctt-ccctgtctttatccacatcttatagcttaagttcaga |
29941281 |
T |
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| Q |
515 |
cat |
517 |
Q |
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| T |
29941282 |
cat |
29941284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 1375471 - 1375557
Alignment:
| Q |
94 |
aacatcttgctgaggtgaagaagataacacagaagagagaagctcagtgctatttcttgcaacatcaaaagcttcctttgtttgttc |
180 |
Q |
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| T |
1375471 |
aacatcttgttgtggtgaagatgataacacagtagaaagaagctcgatgctatttctcgcaatatcaaaggcttcctttgtctgttc |
1375557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 1375650 - 1375722
Alignment:
| Q |
309 |
gagttaaaataggagccgagctttcattgttacgaccagggaaccgaatgccccttgatttcaaactctgcaa |
381 |
Q |
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| T |
1375650 |
gagtgaaaatcggagccaagctttcattatcacgaccaggaaacctaataccccttgatctcaaactctgcaa |
1375722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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