View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8256_low_3 (Length: 321)

Name: NF8256_low_3
Description: NF8256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8256_low_3
NF8256_low_3
[»] chr2 (1 HSPs)
chr2 (10-305)||(36521776-36522071)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 36522071 - 36521776
Alignment:
Q  10 tgagaagaagatatgaagaaaagtggtcactattcaatggccatttggttagttagaagttagaaaaagtgatatactatagtactatttctcctattaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36522071 tgagaagaagatatgaagaaaagtggtcactattcaatggccatttggttagttagaagttagaaaaagtgatatactatagtactatttctcctattaa 36521972  T
Q  110 aatgtcaatgatttgctcaataggtgtcatgaagnnnnnnncaaatattctaataatgtcatgaaagaaagttaattgtaattcaaataattcttctcat 209  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36521971 aatgtcaatgatttgctcaataggtgtcatgaagaaaaaaacaaatattctaataatgtcatgaaagaaagttaattgtaattcaaataattcttctcat 36521872  T
Q  210 tggagcatagtcaagatatacactaattgatacattgaatgttcaataatggtggtttgatgatagtgatttgataattataagacagattctatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36521871 tggagcatagtcaagatatacactaattgatacattgaatgttcaataatggtggtttgatgatagtgatttgataattataagacagattctatt 36521776  T

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