View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8256_low_4 (Length: 277)
Name: NF8256_low_4
Description: NF8256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8256_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 43586372 - 43586610
Alignment:
| Q |
19 |
gatttacagtagagattttcctcacaaagactctgctgactcatcatcatcatccttttcatatttccattcatgtcctttccactctggtaattgttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43586372 |
gatttacagtagagattttcctcacaaagactctgctgactcat---catcatccttttcatatttccattcatgtcctttccactctggtaattgttga |
43586468 |
T |
|
| Q |
119 |
atcacgacctacatcacatggaatgaaaatgcaacgatatattgctcaatataaagtaagcataaataataaatacagccattttattaatttattccta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43586469 |
atcacgacctacatcacatggaatgaaaatgtaacgatatattgctcaatataaagtaagcataaataataaatacagccattttattaatttatttata |
43586568 |
T |
|
| Q |
219 |
atctgtatattaacccaaaaaattagtagtactaaccacccc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43586569 |
atctgtatattaacccaaaaaattagtagtactaaccacccc |
43586610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University