View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8256_low_9 (Length: 229)

Name: NF8256_low_9
Description: NF8256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8256_low_9
NF8256_low_9
[»] chr1 (1 HSPs)
chr1 (15-212)||(32663325-32663522)
[»] chr8 (3 HSPs)
chr8 (61-212)||(41143503-41143654)
chr8 (101-156)||(41151329-41151384)
chr8 (175-212)||(41166851-41166888)
[»] chr6 (1 HSPs)
chr6 (70-156)||(26401408-26401494)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 32663325 - 32663522
Alignment:
Q  15 tggtgttgcttaaatatgatagaaaacaaggaagctannnnnnnacaagaaaacgttatcaagttagtagttgtgttagtttataaggtttgaaccgtga 114  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32663325 tggtgttgcttaaatatgatagaaaacaaggaagctatttttttacaagaaaacgttatcaagttagtagttgtgttagtttataaggtttgaaccgtga 32663424  T
Q  115 actttcatcttaaaactccttcggtgtcccttagaaaacaatgaaattttgcttgctataaaaaactcacatttcaccaacattaggatggtaaattt 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32663425 actttcatcttaaaactccttcggtgtcccatagaaaacaatgaaattttgcttgctataaaaaactcacatttcaccaacattaggatggtaaattt 32663522  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 41143503 - 41143654
Alignment:
Q  61 aagaaaacgttatcaagttagtagttgtgttagtttataaggtttgaaccgtgaactttcatcttaaaactccttcggtgtcccttagaaaacaatgaaa 160  Q
    ||||||| ||||| |||||||||||| ||||| ||| ||||||||||||| ||||||||| |||||||||| | || ||||||| || |||||||||||     
T  41143503 aagaaaatgttattaagttagtagttatgttaatttctaaggtttgaaccctgaactttcttcttaaaactacatctgtgtcccctacaaaacaatgaag 41143602  T
Q  161 ttttgcttgctataaaaaactcacatttcaccaacattaggatggtaaattt 212  Q
     |||| |||||||  ||||||||||||||| |||||||||||||||||||||    
T  41143603 gtttggttgctatggaaaactcacatttcatcaacattaggatggtaaattt 41143654  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 41151329 - 41151384
Alignment:
Q  101 ggtttgaaccgtgaactttcatcttaaaactccttcggtgtcccttagaaaacaat 156  Q
    |||||||||| | ||||| | ||||||||||| |||||||||||||||||||||||    
T  41151329 ggtttgaacccttaacttacttcttaaaactctttcggtgtcccttagaaaacaat 41151384  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 41166851 - 41166888
Alignment:
Q  175 aaaaactcacatttcaccaacattaggatggtaaattt 212  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  41166851 aaaaactcacatctcatcaacattaggatggtaaattt 41166888  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 26401408 - 26401494
Alignment:
Q  70 ttatcaagttagtagttgtgttagtttataaggtttgaaccgtgaactttcatcttaaaactccttcggtgtcccttagaaaacaat 156  Q
    ||||||||||||||||  |||| ||||    |||||||||| ||||||| | ||||||||||| || |||||||||| |||||||||    
T  26401408 ttatcaagttagtagtcatgttcgtttcaggggtttgaaccctgaacttccttcttaaaactctttaggtgtcccttggaaaacaat 26401494  T

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