View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_high_12 (Length: 202)
Name: NF8257_high_12
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 9702749 - 9702849
Alignment:
| Q |
94 |
gttataataaaaaatgtaattaagttccatcataagacaaaaataaataaatattcatcacttgggtgaaggttgagaaacagaaacaatggctggtact |
193 |
Q |
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| T |
9702749 |
gttataataaaaaatgtaattaagttccatcataagacaaaaat--------attcatcacttgggtgaaggttgagaaacagaaacaatggttggtact |
9702840 |
T |
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| Q |
194 |
ggaaaatgc |
202 |
Q |
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| T |
9702841 |
ggaaaatgc |
9702849 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9697732 - 9697827
Alignment:
| Q |
1 |
ctaaattttctttttcccatgcactaaactcatttttt-cgcgtaatatctattattatcattaattataaaacttaagtacttctatacccttgt |
95 |
Q |
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||||||||||||||||||||| || ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697732 |
ctaaattttctttttcccatgaaccaaattcatttttttcgcataatatctattattatcattaattataaaacttaagtacttctatacccttgt |
9697827 |
T |
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