View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_high_5 (Length: 448)
Name: NF8257_high_5
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 26017446 - 26017009
Alignment:
| Q |
1 |
cttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaagcttttgtacctccatgtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||| |
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| T |
26017446 |
cttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttctgtgccgcgaattccgaagcttttgtacctccatgtcc |
26017347 |
T |
|
| Q |
101 |
atcaaatatgccnnnnnnngcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaacca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
26017346 |
atcaaatatgccaaaaaatgcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaacca |
26017247 |
T |
|
| Q |
201 |
taaattcaataagacctttccaaatttgtttaataaatctatatagtat----nnnnnnnnnnnnngatgaacaaatccatgcaacccatgaagttacct |
296 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26017246 |
taaatttaataagacctttccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatgaagttacct |
26017147 |
T |
|
| Q |
297 |
gtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctac |
396 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017146 |
gtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctac |
26017047 |
T |
|
| Q |
397 |
ctcaacaacatccttcgctgccgacggagatggtactg |
434 |
Q |
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| T |
26017046 |
ctcaacaacatccttcgctgccgaccgagatggtactg |
26017009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26002634 - 26002523
Alignment:
| Q |
1 |
cttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaagcttttgtacctccatgtcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||| |
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| T |
26002634 |
cttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagttctgtgccgcgaattccgaagcttttgtacctccatgtcc |
26002535 |
T |
|
| Q |
101 |
atcaaatatgcc |
112 |
Q |
| |
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|||||||||||| |
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| T |
26002534 |
atcaaatatgcc |
26002523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 26002114 - 26001986
Alignment:
| Q |
286 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
385 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
|
| Q |
386 |
tctccttctacctcaacaacatccttcgc |
414 |
Q |
| |
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||||| || |||||||||||||||||||| |
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| T |
26002014 |
tctccctccacctcaacaacatccttcgc |
26001986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 30373307 - 30373225
Alignment:
| Q |
332 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgc |
414 |
Q |
| |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||||| |||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacatccctcgc |
30373225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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