View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8257_high_6 (Length: 399)
Name: NF8257_high_6
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 179 - 384
Target Start/End: Original strand, 24146316 - 24146521
Alignment:
| Q |
179 |
gttagggttgaagtttcacctattccagccgacactaattattataccatgcttccttcaattatgaggccagtaagtatctgtgcttctggttttgagc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24146316 |
gttagggttgaagtttcacctattccagccgacactaattattatactatgcttccttcaattatgaggccagtaagtatctgtgcttctggttttgagc |
24146415 |
T |
|
| Q |
279 |
aatcactaattatggcttttgcattcttcccaggcttccaagctacacttttgctcggcatctctacaacgccgttctttcatcaatcttgtttgaaatc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24146416 |
aatcactaattatggcttttgcattcttcccagggttccaagctacacttttgctcggcatctctacaacgcacttctttcatcaatcttgtttgaaatc |
24146515 |
T |
|
| Q |
379 |
tttcat |
384 |
Q |
| |
|
|||||| |
|
|
| T |
24146516 |
tttcat |
24146521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 145 - 384
Target Start/End: Original strand, 24151692 - 24151945
Alignment:
| Q |
145 |
ataatattctccttaacacttactgtacctgtcagt--tagggttgaagtttcacctattccagccgacactaatta-ttataccatgcttccttcaatt |
241 |
Q |
| |
|
||||| |||| |||| ||||||| |||||||||| | ||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
24151692 |
ataatcttctgcttagcacttaccgtacctgtcaatcttagggttgaagtttcgcctattccagccatcactaattaattatactatgcttccttcaatt |
24151791 |
T |
|
| Q |
242 |
atgaggccagtaa-----------gtatctgtgcttctggttttgagcaatcactaattatggcttttgcattcttcccaggcttccaagctacactttt |
330 |
Q |
| |
|
||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
24151792 |
atgaggccagtaaaattgtagcgagtatctgtgcttctgattatgagcaatcactacttatggcttttgcattcttctaaggcttccaagctacatttta |
24151891 |
T |
|
| Q |
331 |
gctcggcatctctacaacgccgttctttcatcaatcttgtttgaaatctttcat |
384 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24151892 |
gctcggcatctctacaacgcccttctttcatcaatcttgtttgaaatctttcat |
24151945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 24146189 - 24146311
Alignment:
| Q |
17 |
acagcgtaatggtttcactgctgtaataaacaatcagactggcgtgtttattatgatcctctcgtaatgattgatcatttgttgaacaatgaagtgaact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24146189 |
acagcgtaatggtttcactgctgtaataaacgatcagactggcgtgtttattatgatcctctcgtaatgattgatcatttgttgaacaatgaagtgaact |
24146288 |
T |
|
| Q |
117 |
agtacgattttccttcaaagtgt |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24146289 |
agtacgattttccttcaaagtgt |
24146311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24151239 - 24151293
Alignment:
| Q |
17 |
acagcgtaatggtttcactgctgtaataaacaatcagactggcgtgtttattatg |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24151239 |
acagcgtaatggtttcactgctgtaataaacgatcagactggcgtgtttattatg |
24151293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 24151586 - 24151667
Alignment:
| Q |
68 |
tatgatcctctcgtaatgattgatcatttgttgaacaatgaagtgaactagtacgattttccttcaaagtgtgagaaataat |
149 |
Q |
| |
|
|||||||||| | ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24151586 |
tatgatcctcatgcaatcatcgatcatttgttgaacaatgaaatgaactagtacgattttccttcaaaatgtgaaaaataat |
24151667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University