View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8257_high_9 (Length: 328)

Name: NF8257_high_9
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8257_high_9
NF8257_high_9
[»] chr5 (3 HSPs)
chr5 (13-146)||(9436959-9437092)
chr5 (219-315)||(9437165-9437261)
chr5 (251-315)||(33758579-33758643)
[»] chr7 (3 HSPs)
chr7 (13-134)||(15118245-15118366)
chr7 (251-315)||(15118069-15118133)
chr7 (259-315)||(10004338-10004394)
[»] chr2 (2 HSPs)
chr2 (13-111)||(5051932-5052030)
chr2 (265-305)||(7694668-7694708)
[»] chr4 (3 HSPs)
chr4 (222-315)||(50590359-50590452)
chr4 (252-315)||(51406907-51406970)
chr4 (58-121)||(50590200-50590263)
[»] chr3 (1 HSPs)
chr3 (254-315)||(51056070-51056131)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 9436959 - 9437092
Alignment:
Q  13 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9436959 catcaccaccgagaaagggtgttgtgcaacccatatccaccaccaaaccaccgccaccttggaactacaccaaaggccgtcggcggtctacgaccaccca 9437058  T
Q  113 aaaccaaactcacacaaaggatttacagatctgc 146  Q
    ||||||||||||||||||||||||||| ||||||    
T  9437059 aaaccaaactcacacaaaggatttacatatctgc 9437092  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 9437165 - 9437261
Alignment:
Q  219 aataaccacagttcaccgatgcagcaacctttgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437165 aataaccacagtccaccgatgcagcaaccttcgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 9437261  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 33758579 - 33758643
Alignment:
Q  251 gggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33758579 gggagatctggaaaggatggtgcggatggctaaagccgaccgtcgcaccaccaccaactgatgtc 33758643  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 15118366 - 15118245
Alignment:
Q  13 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca 112  Q
    |||||| ||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||| |||||||||    
T  15118366 catcactaccgagaaatggtgttgcgcaacccatatccaccaccaaaccaccgccaccttggaattacaccaaaggctgccagcggtctacgaccaccca 15118267  T
Q  113 aaaccaaactcacacaaaggat 134  Q
    ||||||||| | |||| |||||    
T  15118266 aaaccaaacactcacagaggat 15118245  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 15118133 - 15118069
Alignment:
Q  251 gggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  15118133 gggagatctggaaagggtggtgcggatggctaaacccgaccgtcacaccaccaccaagtgatgtc 15118069  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 10004338 - 10004394
Alignment:
Q  259 tagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    |||||||||||||| |||||||||||||||  |||| |||||||| |||||| ||||    
T  10004338 tagaaagggtggtgtggatggctaaagccgttcgtcgcaccaccatcaactgttgtc 10004394  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 5051932 - 5052030
Alignment:
Q  13 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccc 111  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||| ||||||| || |||||||||||  ||||||||| ||||||||    
T  5051932 catcaccaccgagaaagggtgttgcgcaacccatatcaaccaccaaaccaccgccatcttggaattataccaaaggccgctggcggtctacgaccaccc 5052030  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 7694708 - 7694668
Alignment:
Q  265 gggtggtgcggatggctaaagccgaccgtcacaccaccacc 305  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  7694708 gggtggtgcggatggctaaagtcgaccgtcgcaccaccacc 7694668  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 50590359 - 50590452
Alignment:
Q  222 aaccacagttcaccgatgcagcaacctttgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    ||||||||| |||||| ||  ||||||  ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  50590359 aaccacagtccaccgacgcgacaacctccgggagatctggaaagtgtggtgcggatggctaaagccgaccgtcgcaccaccaccacctgatgtc 50590452  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 51406970 - 51406907
Alignment:
Q  252 ggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  51406970 ggagatctggaaaggatggtgcggatggctaaagccgaccgtcgcaccaccaccatctgatgtc 51406907  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 50590200 - 50590263
Alignment:
Q  58 aaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaaaccaaac 121  Q
    |||| |||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  50590200 aaccgccgctaccttggaattacaccaaaggccgccggcggtctacgaccacccaaaaccaaac 50590263  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 51056131 - 51056070
Alignment:
Q  254 agatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 315  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  51056131 agatctggaaagggtggtgtggatggctaaagccgaccgtcgcaccaccaccaactgatgtc 51056070  T

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