View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_low_1 (Length: 600)
Name: NF8257_low_1
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 584
Target Start/End: Original strand, 23323523 - 23324102
Alignment:
| Q |
16 |
caattgcagtaactccatttataaaaggagnnnnnnntcatcataatcattgatatctttgccgcttagaactagaactagaatcagaactatacttcc- |
114 |
Q |
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| T |
23323523 |
caattgcagtaactccatttataaaaggagaaaaaa-tcatcataatcattgatatctttgccgcttagaactagaactagaatcagaactatacttcca |
23323621 |
T |
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| Q |
115 |
-----------atgaaccatgaggaacaagattaccagcaaagttaagcattgaagaagctgaacaagttgaggtaacatttgaagaaaacttcggcata |
203 |
Q |
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| T |
23323622 |
tgaattgttccatgaaccatgaggcacatgattaccagcaaagttaagcattgaagaagctgaacaagttgaggtaacatttgaagaaaacttcggcata |
23323721 |
T |
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| Q |
204 |
gctggaaaagaaaccggatcgattattatagcagcatcattatcatacactttgatgttcaaaggtggaacttgaatatcattcaaaggaggtggattgc |
303 |
Q |
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| T |
23323722 |
gctggaaaagaaaccgggtcgattattatagcagcatcattatcatacactttgatgttcaagggtggaacttgaatatcattcaaaggaggtggattgc |
23323821 |
T |
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| Q |
304 |
tccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttc |
403 |
Q |
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| T |
23323822 |
tccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttc |
23323921 |
T |
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| Q |
404 |
tttagcaatagaatctatagcaacagttccatgatcagaaactggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatggttgaga |
503 |
Q |
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| T |
23323922 |
tttagcaatagaatctatagcaacagttccatgatcagaaactggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatgattgaga |
23324021 |
T |
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| Q |
504 |
taggccatgttggtgtttgaaaactcaggtgaagaaacagtttcaaagaatgaatcgaccggtggagaaccgtgtgagaga |
584 |
Q |
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| T |
23324022 |
taggccatgttggtgtttgaaaactcaggtgaagaaacagtttcaaagaatgaatcgaccggtggagaaccgtgtgagaga |
23324102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 21010360 - 21010438
Alignment:
| Q |
317 |
tggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaa |
395 |
Q |
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| T |
21010360 |
tggtcctgcaagtaaaagggtctgaagcaaaggaccagctttcatcactgcttgtaaaagtttacctttttcaggcaaa |
21010438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 418
Target Start/End: Original strand, 41159811 - 41159943
Alignment:
| Q |
286 |
tcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttaccctt |
385 |
Q |
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| T |
41159811 |
tcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaattacagcatcaagaagtttaccttt |
41159910 |
T |
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| Q |
386 |
ttgaggcaaaactttttctttagcaatagaatc |
418 |
Q |
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| T |
41159911 |
ttgtggtaacacttttcctcttgcaagagaatc |
41159943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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