View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_low_13 (Length: 206)
Name: NF8257_low_13
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 13447250 - 13447078
Alignment:
| Q |
17 |
gatacatggttgatttatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
116 |
Q |
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| T |
13447250 |
gatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
13447151 |
T |
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| Q |
117 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgat |
189 |
Q |
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| T |
13447150 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgat |
13447078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 13419699 - 13419527
Alignment:
| Q |
17 |
gatacatggttgatttatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
116 |
Q |
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| T |
13419699 |
gatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtga |
13419600 |
T |
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| Q |
117 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgat |
189 |
Q |
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| T |
13419599 |
tggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgat |
13419527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 13426590 - 13426418
Alignment:
| Q |
17 |
gatacatggttgatttatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
116 |
Q |
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| T |
13426590 |
gatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtga |
13426491 |
T |
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| Q |
117 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgat |
189 |
Q |
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| T |
13426490 |
tggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgat |
13426418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 13413265 - 13413183
Alignment:
| Q |
106 |
aagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctga |
188 |
Q |
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| T |
13413265 |
aagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctga |
13413183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
| Q |
131 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
185 |
Q |
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| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc |
13454035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 13393562 - 13393628
Alignment:
| Q |
124 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg |
190 |
Q |
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| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatg |
13393628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 47601427 - 47601348
Alignment:
| Q |
111 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg |
190 |
Q |
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| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcccgatg |
47601348 |
T |
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