View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_low_2 (Length: 584)
Name: NF8257_low_2
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 38 - 565
Target Start/End: Original strand, 7131637 - 7132164
Alignment:
| Q |
38 |
ccgacaccacaacatcaacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaagcatgcaa |
137 |
Q |
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| T |
7131637 |
ccgacaccacaacatcaacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcatgcaa |
7131736 |
T |
|
| Q |
138 |
aggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagaccttaaggttacactcacctactcctttatta |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131737 |
aggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagaccttaaggttacactcacctactcctttatta |
7131836 |
T |
|
| Q |
238 |
ctccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131837 |
ctccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctc |
7131936 |
T |
|
| Q |
338 |
aatattggactgatgctgagatgtttattccagagagatttgaaggtagtactattgattttagagggaataattttgaatatcttccttttggagcagg |
437 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131937 |
aatattggactgatgctgagatgtttaatccagagagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttggagcagg |
7132036 |
T |
|
| Q |
438 |
tagaagaatttgccctggcttgcaatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatc |
537 |
Q |
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| T |
7132037 |
tagaagaatttgccctggcttgcaatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatg |
7132136 |
T |
|
| Q |
538 |
aaacctatggatttggatatgactgaac |
565 |
Q |
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| T |
7132137 |
aaacctatggatttggatatgactgaac |
7132164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 53 - 564
Target Start/End: Original strand, 7154146 - 7154657
Alignment:
| Q |
53 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattat |
152 |
Q |
| |
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||||||||| ||||| ||||||||| |||||||||| |||||||||| | ||||||||||||||| |||||||||||| ||||||||| |||| || |
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| T |
7154146 |
caacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataat |
7154245 |
T |
|
| Q |
153 |
atctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgc |
252 |
Q |
| |
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| T |
7154246 |
atctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgc |
7154345 |
T |
|
| Q |
253 |
actgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatg |
352 |
Q |
| |
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|||||||| |||| ||| ||||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||||| ||||| |||||||||||||||| |
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| T |
7154346 |
actgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatg |
7154445 |
T |
|
| Q |
353 |
ctgagatgtttattccagagagatttgaaggtagtactattgattttagagggaataattttgaatatcttccttttggagcaggtagaagaatttgccc |
452 |
Q |
| |
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|||||||||| ||||||||||| ||||| |||||| |||||||| | ||| ||||||||||| ||| |||||||||| || || |||||||| || || |
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| T |
7154446 |
ctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtcc |
7154545 |
T |
|
| Q |
453 |
tggcttgcaatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatcaaacctatggatttg |
552 |
Q |
| |
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||| || ||||||||||||| || ||||||||||| | ||||||||||| |||||||||||||||||||| || ||| |||| |||||| ||||||| |
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| T |
7154546 |
aggcatgtcatttggtatagctagtgttatgcttcctcttgctttattactatatcattttaattgggaactaccaaatcagatgaaacctgaggatttg |
7154645 |
T |
|
| Q |
553 |
gatatgactgaa |
564 |
Q |
| |
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|||||||||||| |
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| T |
7154646 |
gatatgactgaa |
7154657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 53 - 380
Target Start/End: Original strand, 7141376 - 7141703
Alignment:
| Q |
53 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattat |
152 |
Q |
| |
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||||||||| |||||| ||||||||| |||||||||| ||||| |||| | | || |||||||||||| ||||| |||||| ||| || || ||| | || |
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| T |
7141376 |
caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaat |
7141475 |
T |
|
| Q |
153 |
atctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgc |
252 |
Q |
| |
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|| ||||| |||| | | |||| ||| |||| |||||||| ||||| || || ||||||||| ||||| ||||||| || | || ||| || |
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| T |
7141476 |
atatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagc |
7141575 |
T |
|
| Q |
253 |
actgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatg |
352 |
Q |
| |
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|| ||| ||||||| || ||||| ||||||||||||||||| |||| |||| | || |||| ||||| || | ||| |||||| ||||||||| ||||| |
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| T |
7141576 |
acagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatg |
7141675 |
T |
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| Q |
353 |
ctgagatgtttattccagagagatttga |
380 |
Q |
| |
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|||||| ||||||||||||||| ||||| |
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| T |
7141676 |
ctgagaggtttattccagagaggtttga |
7141703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 12425604 - 12425527
Alignment:
| Q |
54 |
aacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaagc |
131 |
Q |
| |
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|||||||| ||||| |||||||| | |||||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagc |
12425527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 12268081 - 12268157
Alignment:
| Q |
54 |
aacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaag |
130 |
Q |
| |
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|||||||| ||||| |||||||| | ||||||||||| || |||| || ||||||||||||||||||||||||| |
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|
| T |
12268081 |
aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaag |
12268157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 55958833 - 55958758
Alignment:
| Q |
54 |
aacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaa |
129 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||||| |||||||| || |||||| |||||||||||||| |
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|
| T |
55958833 |
aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaa |
55958758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 55955267 - 55955200
Alignment:
| Q |
64 |
tgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaagcacaagctgaaataagagaagc |
131 |
Q |
| |
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||||| |||||||| ||||||||||| |||| |||||||| ||||||||| | |||||||||||||| |
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| T |
55955267 |
tgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagc |
55955200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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