View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8257_low_3 (Length: 582)

Name: NF8257_low_3
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8257_low_3
NF8257_low_3
[»] chr7 (5 HSPs)
chr7 (4-568)||(36196381-36196944)
chr7 (117-168)||(2144547-2144598)
chr7 (110-161)||(48964063-48964114)
chr7 (124-161)||(3534042-3534079)
chr7 (117-161)||(5937429-5937473)
[»] scaffold0314 (1 HSPs)
scaffold0314 (109-161)||(8955-9007)
[»] chr4 (2 HSPs)
chr4 (110-161)||(13307884-13307935)
chr4 (104-161)||(44362673-44362730)
[»] chr2 (2 HSPs)
chr2 (74-161)||(18512107-18512194)
chr2 (110-161)||(43586006-43586057)
[»] scaffold0024 (1 HSPs)
scaffold0024 (111-161)||(18110-18160)
[»] chr8 (1 HSPs)
chr8 (109-161)||(27733854-27733906)
[»] chr6 (4 HSPs)
chr6 (110-161)||(6751883-6751934)
chr6 (110-161)||(16503682-16503733)
chr6 (110-161)||(19369824-19369875)
chr6 (115-161)||(10031577-10031623)
[»] chr3 (2 HSPs)
chr3 (110-161)||(6984771-6984822)
chr3 (110-175)||(15864236-15864303)
[»] chr5 (1 HSPs)
chr5 (78-159)||(16207560-16207641)


Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 4 - 568
Target Start/End: Complemental strand, 36196944 - 36196381
Alignment:
Q  4 gttgaagatgaagaagcttaaggaagtagaagagtgtgagagttctgaaaatggttagtctggtgtgtgcaccgacacttctgattgatgatgtgccgtg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| ||||    
T  36196944 gttgaagatgaagaagcttaaggaagtagaagagtgtgagagttctgaaaatggttagtcttgtgtgtgcacggacacttctgattgatgacgtgtcgtg 36196845  T
Q  104 gtgtttgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttatgtgtcaacacgtccgtgtcggtgtcgtgtttgtgttcgtgct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  36196844 gtgtttgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttatgtgtcaacgcgtccgtgtcagggtcgtgtttgtgttcgtgct 36196745  T
Q  204 tttgtgttttctactaaattttattgttgtttcaaatgagtagtaagatatcaaatgagcaagttgcatttccatttgctgccatgtattaagaaaatgc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196744 tttgtgttttctactaaattttattgttgtttcaaatgagtagtaagataaaaaatgagcaagttgcatttccatttgctgccatgtattaagaaaatgc 36196645  T
Q  304 agagaatttgaattccctttatgacccgtgttgcaaaatgcggatcgtggaaaatagcattttgttcaaattttgttaagctacacagttatagcactgt 403  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36196644 agagaatttgaattccctttatgatccgtgttgcaaaatgcggatcgtggaaaatagca-tttgttcaaattttgttaagctacacagttatagcactgt 36196546  T
Q  404 tttagctgttatttgacaacatttggaactaaatcgcgaattatgaaaaatagtggtttgttataatgtcattactctataacgctgtaactaataatgt 503  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36196545 tttagccgttatttgacaacatttggaactaaatcgcgaattatgaaaaatagtggtttgttataatgtcattactctataacgctataactaataatgt 36196446  T
Q  504 gatatgttcgctacaatgtttataactatgcatgctaatgttgtagtttatcttgtttaaaagtg 568  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196445 gatatgtccgccacaatgtttataactatgcatgctaatgttgtagtttatcttgtttaaaagtg 36196381  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 2144547 - 2144598
Alignment:
Q  117 acacttgtgattatgttgaattatgttgttttctcaaaattttatgtgtcaa 168  Q
    |||| ||||||||  |||||||||||  ||||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaattttatgtgtcaa 2144598  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 48964063 - 48964114
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    ||||||||||||||||||||  |||||||||||  |||||||| ||||||||    
T  48964063 gacaccaacacttgtgattaaattgaattatgtcattttctcacaattttat 48964114  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 3534042 - 3534079
Alignment:
Q  124 tgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  3534042 tgattatgtttaattatgttattttctcaaaattttat 3534079  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 5937429 - 5937473
Alignment:
Q  117 acacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||||||  |||||||||||  |||||||||||||||||    
T  5937429 acacttgtgattacattgaattatgtcattttctcaaaattttat 5937473  T

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Target: scaffold0314 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 9007 - 8955
Alignment:
Q  109 tgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    ||||||| ||||||||||||| ||||||||||||  |||||||||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttat 8955  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 13307935 - 13307884
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    ||||||||||||||||||||  |||||||||||  |||||||||||||||||    
T  13307935 gacaccaacacttgtgattacattgaattatgtcattttctcaaaattttat 13307884  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 44362730 - 44362673
Alignment:
Q  104 gtgtttgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||| |||||||||||||||||||||  || ||||||||  |||||||||||||||||    
T  44362730 gtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttat 44362673  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 18512107 - 18512194
Alignment:
Q  74 accgacacttctgattgatgatgtgccgtggtgtttgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||||||||||| | |||| |  ||||| ||||||  |||| ||||||||  ||||||||| || |||||||||||||||||    
T  18512107 accgacacttctgattgaaggtgtgtcccggtgtgtgacactgacacatgtgattacattgaattatattattttctcaaaattttat 18512194  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 43586006 - 43586057
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||| |||||||||||||  |||||||||||  |||||||||||||||||    
T  43586006 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 43586057  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 18110 - 18160
Alignment:
Q  111 acaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    ||||||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18110 acaccaacacttgcgattacattgaattatgttattttctcaaaattttat 18160  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 27733906 - 27733854
Alignment:
Q  109 tgacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||||||||||||||  ||||||||| |  |||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttat 27733854  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 6751883 - 6751934
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||| |||||||||||||  |||||||||||  |||||||||||||||||    
T  6751883 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 6751934  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 16503733 - 16503682
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||||| |||||||  ||||||||| | ||||||||||||||||||    
T  16503733 gacaccaacactagtgattacattgaattatatagttttctcaaaattttat 16503682  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 19369875 - 19369824
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||| |||||||||||||  |||||||||||  |||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 19369824  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 10031623 - 10031577
Alignment:
Q  115 caacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||    
T  10031623 caacacttgtgattacattgaattatgtcattttctcaaaattttat 10031577  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 6984822 - 6984771
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 161  Q
    |||||| || ||||||||||| ||||||| |||| |||||||||||||||||    
T  6984822 gacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 6984771  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 15864303 - 15864236
Alignment:
Q  110 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat--gtgtcaacacgtcc 175  Q
    ||||||||||||  ||||||| |||||||||||  ||||||||||| |||||  ||||||||| ||||    
T  15864303 gacaccaacactaatgattatattgaattatgtcattttctcaaaactttatccgtgtcaacatgtcc 15864236  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 16207560 - 16207641
Alignment:
Q  78 acacttctgattgatgatgtgccgtggtgtttgacaccaacacttgtgattatgttgaattatgttgttttctcaaaatttt 159  Q
    |||||||| ||||| | |||| | | |||| |||||||||||||||||||||  |||||||||||   |||||| |||||||    
T  16207560 acacttctaattgacggtgtgtcttagtgtctgacaccaacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

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