View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8257_low_5 (Length: 499)
Name: NF8257_low_5
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 7131703 - 7132164
Alignment:
| Q |
19 |
acaaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaaga |
118 |
Q |
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| T |
7131703 |
acaaggcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaaga |
7131802 |
T |
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| Q |
119 |
gaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtc |
218 |
Q |
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| T |
7131803 |
gaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtc |
7131902 |
T |
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| Q |
219 |
atgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttgaaggtagtactattgattttagag |
318 |
Q |
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| T |
7131903 |
atgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccagagagatttgaaggtagttctattgattttagag |
7132002 |
T |
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| Q |
319 |
ggaataattttgaatatcttccttttggagcaggtagaagaatttgccctggcttgcaatttggtatagctggtattatgcttcctgtggctttattact |
418 |
Q |
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| T |
7132003 |
ggaataattttgaatatcttccttttggagcaggtagaagaatttgccctggcttgcaatttggtatagctggtattatgcttcctgtggctttattact |
7132102 |
T |
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| Q |
419 |
ttatcattttaattgggaacttcctaataagatcaaacctatggatttggatatgactgaac |
480 |
Q |
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| T |
7132103 |
ttatcattttaattgggaacttcctaataagatgaaacctatggatttggatatgactgaac |
7132164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 7154199 - 7154657
Alignment:
| Q |
21 |
aaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagaga |
120 |
Q |
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||||||||||||||| |||||||||||| ||||||||| |||| ||||||||| |||| | | ||||| | ||| | || |||||||| ||||| | |
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| T |
7154199 |
aaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaa |
7154298 |
T |
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| Q |
121 |
ccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcat |
220 |
Q |
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| T |
7154299 |
caatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgat |
7154398 |
T |
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| Q |
221 |
gattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttgaaggtagtactattgattttagaggg |
320 |
Q |
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||| |||| |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| | ||| |
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| T |
7154399 |
gataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaagga |
7154498 |
T |
|
| Q |
321 |
aataattttgaatatcttccttttggagcaggtagaagaatttgccctggcttgcaatttggtatagctggtattatgcttcctgtggctttattacttt |
420 |
Q |
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| T |
7154499 |
aataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcatgtcatttggtatagctagtgttatgcttcctcttgctttattactat |
7154598 |
T |
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| Q |
421 |
atcattttaattgggaacttcctaataagatcaaacctatggatttggatatgactgaa |
479 |
Q |
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||||||||||||||||||| || ||| |||| |||||| ||||||||||||||||||| |
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| T |
7154599 |
atcattttaattgggaactaccaaatcagatgaaacctgaggatttggatatgactgaa |
7154657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 295
Target Start/End: Original strand, 7141508 - 7141703
Alignment:
| Q |
100 |
taaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatat |
199 |
Q |
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|||| |||||||| ||||| || || ||||||||| ||||| ||||||| || | || ||| |||| ||| ||||||| || ||||| |||||||| |
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| T |
7141508 |
taaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaatagatgggtatgatat |
7141607 |
T |
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| Q |
200 |
accaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttattccagagagatttga |
295 |
Q |
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||||||||| |||| |||| | || |||| ||||| || | ||| |||||| ||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
7141608 |
accaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttga |
7141703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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