View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8257_low_8 (Length: 371)
Name: NF8257_low_8
Description: NF8257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8257_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 36767246 - 36766899
Alignment:
| Q |
7 |
tcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36767246 |
tcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataagg |
36767147 |
T |
|
| Q |
107 |
tctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgccca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36767146 |
tctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgccca |
36767047 |
T |
|
| Q |
207 |
cacctccagaagaactaggcagattccttctagaatattgcacaggaggcgcagttgatgaactcgaaatctccggtcgattacgcttgaagggtgtggc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36767046 |
cacctccagaagaactaggcagattccttctagaatattgcacaggaggtgcagttgatgaactcgaaatctctggtcgattacgcttgaagggtgtggc |
36766947 |
T |
|
| Q |
307 |
ctggaaattatcggttggagtttcctgtggagagttccttataggatc |
354 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36766946 |
ctggaaatgattggttggagtttcctgtggagagttccttataggatc |
36766899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 149 - 354
Target Start/End: Complemental strand, 36748662 - 36748457
Alignment:
| Q |
149 |
tcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaagaactaggcagattccttctagaatattgca |
248 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
36748662 |
tcatcacctctcccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccaaaagaactagacagactccttctagaatattgca |
36748563 |
T |
|
| Q |
249 |
caggaggcgcagttgatgaactcgaaatctccggtcgattacgcttgaagggtgtggcctggaaattatcggttggagtttcctgtggagagttccttat |
348 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
36748562 |
aaggaggcgcagttgatgtacttgaaatctccggtcgatgacgcttgaggggtgtggcctgaaaataattggttggagtttcctgtggagagttccttat |
36748463 |
T |
|
| Q |
349 |
aggatc |
354 |
Q |
| |
|
|||||| |
|
|
| T |
36748462 |
aggatc |
36748457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 36748766 - 36748659
Alignment:
| Q |
21 |
ccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaa |
120 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||| || ||| |||||||||||||||||| |||||||||| |
|
|
| T |
36748766 |
ccagactggtttggagtgccgtttcaaatcccaattccttaactttttcatgatacttctccataccgaagtgcttgtcaataaggtctgcaagtggaaa |
36748667 |
T |
|
| Q |
121 |
attgtcat |
128 |
Q |
| |
|
|| ||||| |
|
|
| T |
36748666 |
atcgtcat |
36748659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 36771843 - 36771625
Alignment:
| Q |
8 |
cgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggt |
107 |
Q |
| |
|
|||||||||||| | ||| | ||||| |||||| ||| |||| || |||||| |||||||||||| | ||||| || ||||||||| |||||||||| |
|
|
| T |
36771843 |
cgaatgcaatccgctaggtttgtttgtagtgccctttgtaatctcagctccttagctttttcatgatgcatttccttaccgaaatgcttatcaataaggt |
36771744 |
T |
|
| Q |
108 |
ctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccac |
207 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | |||||||||||||||| ||| | ||||| ||||||| |||||||||||| |||| || | || |
|
|
| T |
36771743 |
ctccaagtggaaaaccgacatcccagattaatgcgtcatcatcatcaccactaccatttatctcggtaaaaagtgatgtccacatttcatacacatctac |
36771644 |
T |
|
| Q |
208 |
acctccagaagaactaggc |
226 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
36771643 |
acctttagaagaactaggc |
36771625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 36756117 - 36756042
Alignment:
| Q |
8 |
cgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttcca |
83 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
36756117 |
cgaatgcaatccaccaggctggtttggagtgccgtttcaaatcccaattccttaactttttcatgattcttctcca |
36756042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 21138325 - 21138147
Alignment:
| Q |
22 |
caggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaa |
121 |
Q |
| |
|
|||||| ||||||||| | |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| | |||| | |||| | |||||| |
|
|
| T |
21138325 |
caggctagtttggagtactctttcaaattccaactccttaactttttcatgaaacttttcctgactgaaatgcttattgataaagcctccgaaaggaaaa |
21138226 |
T |
|
| Q |
122 |
ttgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatcca |
200 |
Q |
| |
|
|| |||| ||||| | | | | |||| |||||||||| | | |||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
21138225 |
ttatcatcccagactgatgtggtatcaccatcaccactactattgatctcagtgaaaaatgacgtccacatttcatcca |
21138147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 36756038 - 36755965
Alignment:
| Q |
130 |
ccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgc |
203 |
Q |
| |
|
||||||||| | |||||| ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
36756038 |
ccagattaatggggcatcaccatcaccgctaccaccgatctcagtaaaatatgatgtccacatatcatcgatgc |
36755965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 21138038 - 21138000
Alignment:
| Q |
309 |
ggaaattatcggttggagtttcctgtggagagttcctta |
347 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21138038 |
ggaaattattggttggagcttcctgtggagagttcctta |
21138000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 23462775 - 23462824
Alignment:
| Q |
87 |
tgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagatt |
136 |
Q |
| |
|
|||||||||| |||| || |||||||| |||||||||||||| ||||||| |
|
|
| T |
23462775 |
tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagatt |
23462824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 23433088 - 23433176
Alignment:
| Q |
23 |
aggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctcc |
111 |
Q |
| |
|
||||| ||||||||| | |||| ||| ||| |||||| ||||||||| | |||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
23433088 |
aggctagtttggagtactctttctaattccatctccttaactttttcaaaaaacttttccttactgaattgcttatcaataaggtctcc |
23433176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University