View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8258_low_1 (Length: 270)
Name: NF8258_low_1
Description: NF8258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8258_low_1 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 45785683 - 45785929
Alignment:
| Q |
9 |
tggtgtttattccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttagaaagatgccatcatattcag |
108 |
Q |
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| T |
45785683 |
tggtgtttattccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttagaaagatgccatcatattcag |
45785782 |
T |
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| Q |
109 |
cccatggaattaggcagcgagagcagtgggagatatcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaacacc |
208 |
Q |
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| T |
45785783 |
cccatggaattaggcagcgagagcagtgggagatatcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaacacc |
45785882 |
T |
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| Q |
209 |
acgttctagagcaaactgaacttgtgcttcatgtgtatcccttggtg |
255 |
Q |
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| T |
45785883 |
acgttctagagcaaactgaacttgtgcttcatgtgtatctcttggtg |
45785929 |
T |
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Target: scaffold0019 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 66606 - 66761
Alignment:
| Q |
100 |
catattcagcccatggaattaggcagcgagagcagtgggagatatcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgc |
199 |
Q |
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| T |
66606 |
catattcaggccatggaataagacaacgagaacaatgtgccatgtcaaaggctcttgaagggaaaggtaatctctttgaagcaaaaacaccaataactgc |
66705 |
T |
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| Q |
200 |
aggaacaccacgttctagagcaaactgaacttgtgcttcatgtgtatcccttggtg |
255 |
Q |
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| T |
66706 |
aggaacacctctttcaagagcaaattgaacttgtgcttcatgagtatcccttggtg |
66761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 65716 - 65779
Alignment:
| Q |
26 |
aattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttaga |
89 |
Q |
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| T |
65716 |
aattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttaga |
65779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 14181 - 14243
Alignment:
| Q |
144 |
tcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaaca |
206 |
Q |
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| T |
14181 |
tcaaaagctcttgaatggaatggtaacctcttggaggctaagacaccaatcaatgcaggaaca |
14243 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 12402890 - 12402956
Alignment:
| Q |
189 |
ccaatcaatgcaggaacaccacgttctagagcaaactgaacttgtgcttcatgtgtatcccttggtg |
255 |
Q |
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| T |
12402890 |
ccaatcaatgcaggaacacctcgttcaagagcaaattgaacttgagcttcatgagtatctcttggtg |
12402956 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 28639846 - 28639915
Alignment:
| Q |
186 |
acaccaatcaatgcaggaacaccacgttctagagcaaactgaacttgtgcttcatgtgtatcccttggtg |
255 |
Q |
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| T |
28639846 |
acaccaatcaaagctggaactcctcgttcaagagcaaattgaacttgagcttcatgtgtatctcttggtg |
28639915 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40828967 - 40829031
Alignment:
| Q |
18 |
ttccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttc |
82 |
Q |
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| T |
40828967 |
ttccaattaattggagggccagataaaatccaaaatccaccaggccttaaaactcgatcaacttc |
40829031 |
T |
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